myRT

myRT report for GCA_001891995.1_ASM189199v1

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Seq: MOHB01000014.1 Escherichia coli strain 629 BN4_629_1_(paired)_contig_14, whole genome shotgun sequence (160476 bp)
Overview 1 RT 1: 76634-82637 bp Neighborhood of RT #1 [76634, 82654] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 76634-77968 bp Ori: OJN29706.1 Feature: domain Description: Phage_int_SAM_5 Location: 77003-77240 bp Feature: domain Description: Phage_int_SAM_5 Location: 77003-77240 bp Feature: domain Description: INT_C_like_1 Location: 77336-77852 bp Feature: domain Description: INT_C_like_1 Location: 77336-77852 bp Feature: gene Location: 78237-79421 bp Ori: OJN29631.1 Feature: domain Description: PRK09692 Location: 78243-79398 bp Feature: domain Description: PRK09692 Location: 78243-79398 bp Feature: gene Location: 79414-81042 bp Ori: OJN29632.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79822-80251 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79822-80251 bp Feature: gene Location: 81039-81779 bp Feature: gene Location: 82082-82654 bp Ori: OJN29634.1 Feature: domain Description: Psu Location: 82100-82637 bp Feature: domain Description: Psu Location: 821 00-82637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: MOHB01000068.1 Escherichia coli strain 629 BN4_629_1_(paired)_contig_68, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 927-6790 bp 2 RT 2: 12728-18485 bp Neighborhood of RT #1 [927, 6804] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [12728, 18485] MFS_ShiA_like PHA02517 RVT-GII GIIM Feature: gene Location: 927-2183 bp Ori: OJN23416.1 Feature: domain Description: PRK13381 Location: 933-2148 bp Feature: domain Description: PRK13381 Location: 933-2 148 bp Feature: gene Location: 2180-3541 bp Ori: OJN23417.1 Feature: domain Description: DcuC Location: 2183-3515 bp Feature: domain Description: DcuC Location: 2 183-3515 bp Feature: gene Location: 4187-4633 bp Ori: OJN23418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: gene Location: 5166-6188 bp Ori: OJN23433.1 Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: domain Description: Asparaginase_2 Location: 52 47-6180 bp Feature: gene Location: 6526-6804 bp Ori: OJN23419.1 Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: gene Location: 12728-14122 bp Ori: OJN23422.1 Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: domain Description: MFS_ShiA_like Location: 12 82 4-14072 bp Feature: gene Location: 15728-16216 bp Feature: domain Description: PHA02517 Location: 15731-16187 bp Feature: domain Description: PHA02 517 Location: 15731-16187 bp Feature: gene Location: 16297-17805 bp Ori: OJN23423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-172 87 bp Feature: domain Description: GIIM Note: maturase Location: 17362-17560 bp Feature: domain Description: GIIM Note: maturase Location: 17362 -17560 bp Feature: gene Location: 17774-18199 bp Feature: gene Location: 18114-18485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), MFS_ShiA_like (cd17369), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: MOHB01000019.1 Escherichia coli strain 629 BN4_629_1_(paired)_contig_19, whole genome shotgun sequence (38512 bp)
Overview 1 RT 1: 29394-31512 bp Neighborhood of RT #1 [29394, 31514] IS285 group_II_RT_mat RVT-GII PHA02517 COG4930 Feature: gene Location: 29394-29876 bp Ori: OJN28569.1 Feature: domain Description: IS285 Location: 29424-29802 bp Feature: domain Description: IS285 Location: 29424-29802 bp Feature: gene Location: 30015-30255 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30027-30240 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 0027-3 0240 bp Feature: gene Location: 30224-30460 bp Ori: OJN28570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30227-30410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0227-3 0410 bp Feature: gene Location: 30624-31181 bp Feature: domain Description: PHA02517 Location: 30630-31170 bp Feature: domain Description: PHA02517 Location: 3 063 0-3 1170 bp Feature: gene Location: 31290-31514 bp Ori: OJN28571.1 Feature: domain Description: COG4930 Location: 31293-31512 bp Feature: domain Description: COG493 0 Location: 3 1293 -3 1512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG4930 (Predicted ATP-dependent Lon-type protease )