myRT

myRT report for GCA_001892065.1_ASM189206v1

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Seq: MOHG01000046.1 Escherichia coli strain 467 BN4_467_1_(paired)_contig_46, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 10628-16335 bp 2 RT 2: 22309-28151 bp Neighborhood of RT #1 [10628, 16385] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22309, 28186] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10628-10999 bp Feature: gene Location: 10914-11339 bp Feature: gene Location: 11308-12816 bp Ori: OJN52618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 566-1 2298 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: domain Description: GIIM Note: maturase Location: 1 2373-1 2571 bp Feature: gene Location: 12897-13385 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: domain Description: PHA0251 7 Location: 1 2900-1 3356 bp Feature: gene Location: 14991-16385 bp Ori: OJN52611.1 Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: domain Description: MFS_ShiA_like Location: 1 5087-1 6335 bp Feature: gene Location: 22309-22587 bp Ori: OJN52614.1 Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: gene Location: 22925-23947 bp Ori: OJN52621.1 Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: gene Location: 24480-24926 bp Ori: OJN52615.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: gene Location: 25572-26933 bp Ori: OJN52616.1 Feature: domain Description: DcuC Location: 25575-26907 bp Feature: domain Description: DcuC Location: 25575-26907 bp Feature: gene Location: 26930-28186 bp Ori: OJN52617.1 Feature: domain Description: PRK13381 Location: 26936-28151 bp Feature: domain Description: PRK1 3381 Location: 26936-281 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MOHG01000034.1 Escherichia coli strain 467 BN4_467_1_(paired)_contig_34, whole genome shotgun sequence (119408 bp)
Overview 1 RT 1: 35570-41573 bp Neighborhood of RT #1 [35570, 41590] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 35570-36904 bp Ori: OJN53972.1 Feature: domain Description: Phage_int_SAM_5 Location: 35939-36176 bp Feature: domain Description: Phage_int_SAM_5 Location: 35939-36176 bp Feature: domain Description: INT_C_like_1 Location: 36272-36788 bp Feature: domain Description: INT_C_like_1 Location: 362 72 -36788 bp Feature: gene Location: 37173-38357 bp Ori: OJN53897.1 Feature: domain Description: PRK09692 Location: 37179-38334 bp Feature: domain Description: PRK09692 Location: 37179-38334 bp Feature: gene Location: 38350-39978 bp Ori: OJN53898.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38758-39187 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38758-39187 bp Feature: gene Location: 39975-40715 bp Feature: gene Location: 41018-41590 bp Ori: OJN53900.1 Feature: domain Description: Psu Location: 41036-41573 bp Feature: domain Description: Psu Location: 41036-41573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: MOHG01000013.1 Escherichia coli strain 467 BN4_467_1_(paired)_contig_13, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 29394-31512 bp Neighborhood of RT #1 [29394, 31514] IS285 group_II_RT_mat RVT-GII PHA02517 COG4930 Feature: gene Location: 29394-29876 bp Ori: OJN68597.1 Feature: domain Description: IS285 Location: 29424-29802 bp Feature: domain Description: IS285 Location: 29424-29802 bp Feature: gene Location: 30015-30255 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30027-30240 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 0027-3 0240 bp Feature: gene Location: 30224-30460 bp Ori: OJN68598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30227-30410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0227-3 0410 bp Feature: gene Location: 30624-31181 bp Feature: domain Description: PHA02517 Location: 30630-31170 bp Feature: domain Description: PHA02517 Location: 3 063 0-3 1170 bp Feature: gene Location: 31290-31514 bp Ori: OJN68599.1 Feature: domain Description: COG4930 Location: 31293-31512 bp Feature: domain Description: COG493 0 Location: 3 1293 -3 1512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG4930 (Predicted ATP-dependent Lon-type protease )