myRT

myRT report for GCA_001892105.1_ASM189210v1

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Seq: MOHH01000032.1 Escherichia coli strain 466 BN4_466_1_(paired)_contig_33, whole genome shotgun sequence (118782 bp)
Overview 1 RT 1: 77827-83731 bp Neighborhood of RT #1 [77827, 83847] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77827-78399 bp Ori: OJN59022.1 Feature: domain Description: Psu Location: 77845-78382 bp Feature: domain Description: Psu Location: 77845-78382 bp Feature: gene Location: 78702-79442 bp Feature: gene Location: 79439-81067 bp Ori: OJN59024.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: gene Location: 81060-82244 bp Ori: OJN59025.1 Feature: domain Description: PRK09692 Location: 81066-82221 bp Feature: domain Description: PRK09692 Location: 81 066-82221 bp Feature: gene Location: 82513-83847 bp Ori: OJN59062.1 Feature: domain Description: Phage_int_SAM_5 Location: 82882-83119 bp Feature: domain Description: Phage_int_SAM_5 Location: 82882-831 1 9 bp Feature: domain Description: INT_C_like_1 Location: 83215-83731 bp Feature: domain Description: INT_C_like_1 Location: 8321 5-83731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOHH01000066.1 Escherichia coli strain 466 BN4_466_1_(paired)_contig_67, whole genome shotgun sequence (18236 bp)
Overview 1 RT 1: 10769-12815 bp Neighborhood of RT #1 [10769, 12889] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10769-10993 bp Ori: OJN53727.1 Feature: domain Description: COG4930 Location: 10772-10991 bp Feature: domain Description: COG4930 Location: 10772 -10991 bp Feature: gene Location: 11102-11659 bp Feature: domain Description: PHA02517 Location: 11108-11648 bp Feature: domain Description: PHA02 517 Location: 11108-11648 bp Feature: gene Location: 11823-12059 bp Ori: OJN53728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11826-12009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1182 6-12 009 bp Feature: gene Location: 12028-12268 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12040-12253 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 040-12 2 53 bp Feature: gene Location: 12407-12889 bp Ori: OJN53729.1 Feature: domain Description: IS285 Location: 12437-12815 bp Feature: domain Description: IS2 85 Location: 12 437-12 815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOHH01000046.1 Escherichia coli strain 466 BN4_466_1_(paired)_contig_47, whole genome shotgun sequence (19019 bp)
Overview 1 RT 1: 536-6243 bp 2 RT 2: 12217-18059 bp Neighborhood of RT #1 [536, 6293] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [12217, 18094] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 536-907 bp Feature: gene Location: 822-1247 bp Feature: gene Location: 1216-2724 bp Ori: OJN56226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474-2206 bp Feature: domain Description: GIIM Note: maturase Location: 2281-2479 bp Feature: domain Description: GIIM Note: maturase Location: 2281-2479 bp Feature: gene Location: 2805-3293 bp Feature: domain Description: PHA02517 Location: 2808-3264 bp Feature: domain Description: PHA02517 Location: 2808-3 264 bp Feature: gene Location: 4899-6293 bp Ori: OJN56219.1 Feature: domain Description: MFS_ShiA_like Location: 4995-6243 bp Feature: domain Description: MFS_ShiA_like Location: 4995-6243 bp Feature: gene Location: 12217-12495 bp Ori: OJN56222.1 Feature: domain Description: DUF5339 Location: 12280-12481 bp Feature: domain Description: DUF53 3 9 Location: 12280-12481 bp Feature: gene Location: 12833-13855 bp Ori: OJN56229.1 Feature: domain Description: Asparaginase_2 Location: 12914-13847 bp Feature: domain Description: Asparaginase_2 Location: 12914-13 847 bp Feature: gene Location: 14388-14834 bp Ori: OJN56223.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14694-14796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14694-14796 bp Feature: gene Location: 15480-16841 bp Ori: OJN56224.1 Feature: domain Description: DcuC Location: 15483-16815 bp Feature: domain Description: DcuC Location: 15483 -16815 bp Feature: gene Location: 16838-18094 bp Ori: OJN56225.1 Feature: domain Description: PRK13381 Location: 16844-18059 bp Feature: domain Description: PRK13 3 81 Location: 16844-18059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)