myRT

myRT report for GCA_001892125.1_ASM189212v1

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Seq: MOHI01000007.1 Escherichia coli strain 465 BN4_465_1_(paired)_contig_7, whole genome shotgun sequence (118986 bp)
Overview 1 RT 1: 77827-83731 bp Neighborhood of RT #1 [77827, 83847] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77827-78399 bp Ori: OJN67726.1 Feature: domain Description: Psu Location: 77845-78382 bp Feature: domain Description: Psu Location: 77845-78382 bp Feature: gene Location: 78702-79442 bp Feature: gene Location: 79439-81067 bp Ori: OJN67728.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: gene Location: 81060-82244 bp Ori: OJN67729.1 Feature: domain Description: PRK09692 Location: 81066-82221 bp Feature: domain Description: PRK09692 Location: 81 066-82221 bp Feature: gene Location: 82513-83847 bp Ori: OJN67766.1 Feature: domain Description: Phage_int_SAM_5 Location: 82882-83119 bp Feature: domain Description: Phage_int_SAM_5 Location: 82882-831 1 9 bp Feature: domain Description: INT_C_like_1 Location: 83215-83731 bp Feature: domain Description: INT_C_like_1 Location: 8321 5-83731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOHI01000064.1 Escherichia coli strain 465 BN4_465_1_(paired)_contig_64, whole genome shotgun sequence (29110 bp)
Overview 1 RT 1: 10627-16334 bp 2 RT 2: 22308-28150 bp Neighborhood of RT #1 [10627, 16384] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22308, 28185] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10627-10998 bp Feature: gene Location: 10913-11338 bp Feature: gene Location: 11307-12815 bp Ori: OJN63553.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11565-12297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11565-12 2 97 bp Feature: domain Description: GIIM Note: maturase Location: 12372-12570 bp Feature: domain Description: GIIM Note: maturase Location: 12 372 -12 570 bp Feature: gene Location: 12896-13384 bp Feature: domain Description: PHA02517 Location: 12899-13355 bp Feature: domain Description: PHA02 517 Location: 12 899-13355 bp Feature: gene Location: 14990-16384 bp Ori: OJN63546.1 Feature: domain Description: MFS_ShiA_like Location: 15086-16334 bp Feature: domain Description: MFS_ShiA_like Location: 15086-16334 bp Feature: gene Location: 22308-22586 bp Ori: OJN63549.1 Feature: domain Description: DUF5339 Location: 22371-22572 bp Feature: domain Description: DUF5339 Location: 2 2 371-2 2 572 bp Feature: gene Location: 22924-23946 bp Ori: OJN63556.1 Feature: domain Description: Asparaginase_2 Location: 23005-23938 bp Feature: domain Description: Asparaginase_2 Location: 2 3005-2 3938 bp Feature: gene Location: 24479-24925 bp Ori: OJN63550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24785-24887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4785-2 4887 bp Feature: gene Location: 25571-26932 bp Ori: OJN63551.1 Feature: domain Description: DcuC Location: 25574-26906 bp Feature: domain Description: DcuC Location: 2 5574-2 6906 bp Feature: gene Location: 26929-28185 bp Ori: OJN63552.1 Feature: domain Description: PRK13381 Location: 26935-28150 bp Feature: domain Description: PRK13381 Location: 2 6935-2 8150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MOHI01000038.1 Escherichia coli strain 465 BN4_465_1_(paired)_contig_38, whole genome shotgun sequence (42205 bp)
Overview 1 RT 1: 10693-12739 bp Neighborhood of RT #1 [10693, 12813] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10693-10917 bp Ori: OJN64296.1 Feature: domain Description: COG4930 Location: 10696-10915 bp Feature: domain Description: COG493 0 Location: 10696-10915 bp Feature: gene Location: 11026-11583 bp Feature: domain Description: PHA02517 Location: 11032-11572 bp Feature: domain Description: PHA02517 Location: 1103 2-11572 bp Feature: gene Location: 11747-11983 bp Ori: OJN64297.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11750-11933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11750-1193 3 bp Feature: gene Location: 11952-12192 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11964-12177 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11964-12177 bp Feature: gene Location: 12331-12813 bp Ori: OJN64298.1 Feature: domain Description: IS285 Location: 12361-12739 bp Feature: domain Description: IS285 Location: 123 61-1273 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)