myRT

myRT report for GCA_001892135.1_ASM189213v1

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Seq: MOHJ01000009.1 Escherichia coli strain 628 BN4_628_1_(paired)_contig_9, whole genome shotgun sequence (160270 bp)
Overview 1 RT 1: 77827-83731 bp Neighborhood of RT #1 [77827, 83847] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77827-78399 bp Ori: OJN74820.1 Feature: domain Description: Psu Location: 77845-78382 bp Feature: domain Description: Psu Location: 77845-78382 bp Feature: gene Location: 78702-79442 bp Feature: gene Location: 79439-81067 bp Ori: OJN74822.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: gene Location: 81060-82244 bp Ori: OJN74823.1 Feature: domain Description: PRK09692 Location: 81066-82221 bp Feature: domain Description: PRK09692 Location: 81 066-82221 bp Feature: gene Location: 82513-83847 bp Ori: OJN74894.1 Feature: domain Description: Phage_int_SAM_5 Location: 82882-83119 bp Feature: domain Description: Phage_int_SAM_5 Location: 82882-831 1 9 bp Feature: domain Description: INT_C_like_1 Location: 83215-83731 bp Feature: domain Description: INT_C_like_1 Location: 8321 5-83731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOHJ01000035.1 Escherichia coli strain 628 BN4_628_1_(paired)_contig_35, whole genome shotgun sequence (42341 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJN71579.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA02 517 Location: 11033-11573 bp Feature: gene Location: 11748-11984 bp Ori: OJN71580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12 178 bp Feature: gene Location: 12332-12814 bp Ori: OJN71581.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS2 85 Location: 12 362 -12 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOHJ01000055.1 Escherichia coli strain 628 BN4_628_1_(paired)_contig_55, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 927-6790 bp 2 RT 2: 12728-18485 bp Neighborhood of RT #1 [927, 6804] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [12728, 18485] MFS_ShiA_like PHA02517 RVT-GII GIIM Feature: gene Location: 927-2183 bp Ori: OJN70620.1 Feature: domain Description: PRK13381 Location: 933-2148 bp Feature: domain Description: PRK13 3 81 Location: 93 3 -2148 bp Feature: gene Location: 2180-3541 bp Ori: OJN70621.1 Feature: domain Description: DcuC Location: 2183-3515 bp Feature: domain Description: DcuC Location: 2183 -3 515 bp Feature: gene Location: 4187-4633 bp Ori: OJN70622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493 -4595 bp Feature: gene Location: 5166-6188 bp Ori: OJN70638.1 Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: gene Location: 6526-6804 bp Ori: OJN70623.1 Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: domain Description: DUF53 3 9 Location: 6589-6790 bp Feature: gene Location: 12728-14122 bp Ori: OJN70626.1 Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: gene Location: 15728-16216 bp Feature: domain Description: PHA02517 Location: 15731-16187 bp Feature: domain Description: PHA02517 Location: 1573 1-16187 bp Feature: gene Location: 16297-17805 bp Ori: OJN70627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: domain Description: GIIM Note: maturase Location: 17362-17560 bp Feature: domain Description: GIIM Note: maturase Location: 173 62-17560 bp Feature: gene Location: 17774-18199 bp Feature: gene Location: 18114-18485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), MFS_ShiA_like (cd17369), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)