myRT

myRT report for GCA_001892145.1_ASM189214v1

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Seq: MOHK01000026.1 Escherichia coli strain 627 BN4_627_1_(paired)_contig_26, whole genome shotgun sequence (119416 bp)
Overview 1 RT 1: 35570-41573 bp Neighborhood of RT #1 [35570, 41590] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 35570-36904 bp Ori: OJN96421.1 Feature: domain Description: Phage_int_SAM_5 Location: 35939-36176 bp Feature: domain Description: Phage_int_SAM_5 Location: 35939-361 76 bp Feature: domain Description: INT_C_like_1 Location: 36272-36788 bp Feature: domain Description: INT_C_like_1 Location: 36272-36788 bp Feature: gene Location: 37173-38357 bp Ori: OJN96346.1 Feature: domain Description: PRK09692 Location: 37179-38334 bp Feature: domain Description: PRK09692 Location: 371 79-38334 bp Feature: gene Location: 38350-39978 bp Ori: OJN96347.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38758-39187 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 38758-391 87 bp Feature: gene Location: 39975-40715 bp Feature: gene Location: 41018-41590 bp Ori: OJN96349.1 Feature: domain Description: Psu Location: 41036-41573 bp Feature: domain Description: Psu Location: 41 036-41 573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: MOHK01000065.1 Escherichia coli strain 627 BN4_627_1_(paired)_contig_66, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 10628-16335 bp 2 RT 2: 22309-28151 bp Neighborhood of RT #1 [10628, 16385] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22309, 28186] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10628-10999 bp Feature: gene Location: 10914-11339 bp Feature: gene Location: 11308-12816 bp Ori: OJN91660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12 2 98 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: domain Description: GIIM Note: maturase Location: 12 373-12 571 bp Feature: gene Location: 12897-13385 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: domain Description: PHA02 517 Location: 12 900-13356 bp Feature: gene Location: 14991-16385 bp Ori: OJN91653.1 Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: gene Location: 22309-22587 bp Ori: OJN91656.1 Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: domain Description: DUF5339 Location: 2 2 372 -2 2 573 bp Feature: gene Location: 22925-23947 bp Ori: OJN91663.1 Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: domain Description: Asparaginase_2 Location: 2 3006-2 3939 bp Feature: gene Location: 24480-24926 bp Ori: OJN91657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4786-2 4888 bp Feature: gene Location: 25572-26933 bp Ori: OJN91658.1 Feature: domain Description: DcuC Location: 25575-26907 bp Feature: domain Description: DcuC Location: 2 5575-2 6907 bp Feature: gene Location: 26930-28186 bp Ori: OJN91659.1 Feature: domain Description: PRK13381 Location: 26936-28151 bp Feature: domain Description: PRK13381 Location: 2 6936-2 8151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MOHK01000030.1 Escherichia coli strain 627 BN4_627_1_(paired)_contig_30, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJN94719.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG493 0 Location: 10697-10916 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA02517 Location: 1103 3 -11573 bp Feature: gene Location: 11748-11984 bp Ori: OJN94720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-1193 4 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: gene Location: 12332-12814 bp Ori: OJN94721.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS285 Location: 123 62-12740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)