myRT

myRT report for GCA_001892295.1_ASM189229v1

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Seq: MOFG01000066.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_66, whole genome shotgun sequence (18740 bp)
Overview 1 RT 1: 13310-18728 bp Neighborhood of RT #1 [13310, 18728] HsdM PHA02517 RVT-GII GIIM Feature: gene Location: 13310-15733 bp Ori: OJK89398.1 Feature: domain Description: HsdM Location: 13331-15275 bp Feature: domain Description: HsdM Location: 1 3331 -1 5275 bp Feature: gene Location: 15970-16459 bp Feature: domain Description: PHA02517 Location: 15973-16435 bp Feature: domain Description: PHA0251 7 Location: 1 5973-1 6435 bp Feature: gene Location: 16540-18048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16798-17530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6798-1 7530 bp Feature: domain Description: GIIM Note: maturase Location: 17605-17803 bp Feature: domain Description: GIIM Note: maturase Location: 1 7605-1 7803 bp Feature: gene Location: 18017-18442 bp Feature: gene Location: 18357-18728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOFG01000037.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_37, whole genome shotgun sequence (10164 bp)
Overview 1 RT 1: 2945-8787 bp Neighborhood of RT #1 [2945, 8822] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 2945-3223 bp Ori: OJK92990.1 Feature: domain Description: DUF5339 Location: 3008-3209 bp Feature: domain Description: DUF5339 Location: 3008-32 09 bp Feature: gene Location: 3561-4583 bp Ori: OJK92994.1 Feature: domain Description: Asparaginase_2 Location: 3642-4575 bp Feature: domain Description: Asparaginase_2 Location: 3642 -4575 bp Feature: gene Location: 5116-5562 bp Ori: OJK92991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5422-5524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 2 -552 4 bp Feature: gene Location: 6208-7569 bp Ori: OJK92992.1 Feature: domain Description: DcuC Location: 6211-7543 bp Feature: domain Description: DcuC Location: 62 11-7543 bp Feature: gene Location: 7566-8822 bp Ori: OJK92993.1 Feature: domain Description: PRK13381 Location: 7572-8787 bp Feature: domain Description: PRK13381 Location: 7572 -8787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MOFG01000223.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_224, whole genome shotgun sequence (1379 bp)
Overview 1 RT 1: 1-588 bp Neighborhood of RT #1 [1, 1379] RVT-UG7 Feature: gene Location: 1-336 bp Feature: gene Location: 333-1379 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 339-588 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3 3 9-588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7

Seq: MOFG01000220.1 Escherichia coli strain 619 BN4_619_1_(paired)_contig_221, whole genome shotgun sequence (983 bp)
Overview 1 RT 1: 51-984 bp Neighborhood of RT #1 [51, 983] RVT_N RVT-GII Feature: gene Location: 51-983 bp Feature: domain Description: RVT_N Location: 99-330 bp Feature: domain Description: RVT_N Location: 99-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387-984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII