myRT

myRT report for GCA_001892325.1_ASM189232v1

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Seq: MOFH01000071.1 Escherichia coli strain 455 BN4_455_1_(paired)_contig_71, whole genome shotgun sequence (27675 bp)
Overview 1 RT 1: 1343-7206 bp Neighborhood of RT #1 [1343, 7220] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 1343-2599 bp Ori: OJK86059.1 Feature: domain Description: PRK13381 Location: 1349-2564 bp Feature: domain Description: PRK1 3381 Location: 1 349-2564 bp Feature: gene Location: 2596-3957 bp Ori: OJK86060.1 Feature: domain Description: DcuC Location: 2599-3931 bp Feature: domain Description: DcuC Location: 2599-3931 bp Feature: gene Location: 4603-5049 bp Ori: OJK86061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4909-5011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4909-501 1 bp Feature: gene Location: 5582-6604 bp Ori: OJK86077.1 Feature: domain Description: Asparaginase_2 Location: 5663-6596 bp Feature: domain Description: Asparaginase_2 Location: 5663-6596 bp Feature: gene Location: 6942-7220 bp Ori: OJK86062.1 Feature: domain Description: DUF5339 Location: 7005-7206 bp Feature: domain Description: DUF5339 Location: 7005-7206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: MOFH01000024.1 Escherichia coli strain 455 BN4_455_1_(paired)_contig_24, whole genome shotgun sequence (30629 bp)
Overview 1 RT 1: 10336-14058 bp Neighborhood of RT #1 [10336, 14069] RVT-GII GIIM PHA02517 Tra8 Feature: gene Location: 10336-10704 bp Feature: gene Location: 10619-11044 bp Feature: gene Location: 11013-12521 bp Ori: OJK90218.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11271-12003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 71-12 003 bp Feature: domain Description: GIIM Note: maturase Location: 12078-12276 bp Feature: domain Description: GIIM Note: maturase Location: 12 078-12 2 76 bp Feature: gene Location: 12602-13091 bp Feature: domain Description: PHA02517 Location: 12605-13067 bp Feature: domain Description: PHA02 517 Location: 12 605-13067 bp Feature: gene Location: 13101-14069 bp Feature: domain Description: Tra8 Location: 13104-14058 bp Feature: domain Description: Tra8 Location: 13104-14058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)

Seq: MOFH01000030.1 Escherichia coli strain 455 BN4_455_1_(paired)_contig_30, whole genome shotgun sequence (125845 bp)
Overview 1 RT 1: 79005-81417 bp 2 RT 2: 118144-125846 bp Neighborhood of RT #1 [79005, 81491] PHA02517 InsE RVT-GII group_II_RT_mat IS285 Neighborhood of RT #2 [118144, 125845] HEPN_Apea GerD RVT-UG1 YeeP AidA Feature: gene Location: 79005-79811 bp Ori: OJK89469.1 Feature: domain Description: PHA02517 Location: 79020-79806 bp Feature: domain Description: PHA02517 Location: 79020-79806 bp Feature: gene Location: 79847-80149 bp Ori: OJK89470.1 Feature: domain Description: InsE Location: 79850-80135 bp Feature: domain Description: InsE Location: 79850-8013 5 bp Feature: gene Location: 80425-80661 bp Ori: OJK89471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80428-80608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80428-80608 bp Feature: gene Location: 80630-80870 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 80642-80855 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 80642-80855 bp Feature: gene Location: 81009-81491 bp Ori: OJK89472.1 Feature: domain Description: IS285 Location: 81039-81417 bp Feature: domain Description: IS285 Location: 8103 9-81417 bp Feature: gene Location: 118144-119244 bp Ori: OJK89503.1 Feature: domain Description: HEPN_Apea Location: 118213-118528 bp Feature: domain Description: HEPN_Apea Location: 118213 -118528 bp Feature: gene Location: 119541-119975 bp Ori: OJK89504.1 Feature: domain Description: GerD Location: 119619-119733 bp Feature: domain Description: GerD Location: 119619-11973 3 bp Feature: gene Location: 119984-123673 bp Ori: OJK89505.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 120596-121106 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 120596-121106 bp Feature: gene Location: 124277-125149 bp Ori: OJK89506.1 Feature: domain Description: YeeP Location: 124280-125147 bp Feature: domain Description: YeeP Location: 124280-125147 bp Feature: gene Location: 125522-125845 bp Ori: OJK89507.1 Feature: domain Description: AidA Location: 125561-125846 bp Feature: domain Description: AidA Location: 125561-125846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328), HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1, YeeP (COG3596), AidA (COG3468)