myRT

myRT report for GCA_001892485.1_ASM189248v1

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Seq: MOFV01000144.1 Escherichia coli strain 606 BN4_606_1_(paired)_contig_144, whole genome shotgun sequence (2374 bp)
Overview 1 RT 1: 586-2218 bp Neighborhood of RT #1 [586, 2253] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 586-2253 bp Ori: OJL73848.1 Feature: domain Description: RVT_N Location: 634-871 bp Feature: domain Description: RVT_N Location: 634-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1 564 bp Feature: domain Description: GIIM Note: maturase Location: 1615-1849 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 5-1 849 bp Feature: domain Description: HNHc Note: nucleases Location: 2059-2218 bp Feature: domain Description: HNHc Note: nucleases Location: 2059-221 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOFV01000203.1 Escherichia coli strain 606 BN4_606_1_(paired)_contig_203, whole genome shotgun sequence (2962 bp)
Overview 1 RT 1: 64-2962 bp Neighborhood of RT #1 [64, 2962] RVT-GII group_II_RT_mat DcuC Feature: gene Location: 64-504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-457 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 457-505 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 457-505 bp Feature: gene Location: 1150-2511 bp Ori: OJL71098.1 Feature: domain Description: DcuC Location: 1153-2485 bp Feature: domain Description: DcuC Location: 1153-2 485 bp Feature: gene Location: 2508-2962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), DcuC (TIGR00771)

Seq: MOFV01000041.1 Escherichia coli strain 606 BN4_606_1_(paired)_contig_41, whole genome shotgun sequence (141525 bp)
Overview 1 RT 1: 45450-51354 bp Neighborhood of RT #1 [45450, 51470] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 45450-46022 bp Ori: OJL81803.1 Feature: domain Description: Psu Location: 45468-46005 bp Feature: domain Description: Psu Location: 45468-46005 bp Feature: gene Location: 46325-47065 bp Feature: gene Location: 47062-48690 bp Ori: OJL81805.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47470-47899 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47470-47899 bp Feature: gene Location: 48683-49867 bp Ori: OJL81806.1 Feature: domain Description: PRK09692 Location: 48689-49844 bp Feature: domain Description: PRK09692 Location: 48689-49844 bp Feature: gene Location: 50136-51470 bp Ori: OJL81807.1 Feature: domain Description: Phage_int_SAM_5 Location: 50505-50742 bp Feature: domain Description: Phage_int_SAM_5 Location: 50505-50742 bp Feature: domain Description: INT_C_like_1 Location: 50838-51354 bp Feature: domain Description: INT_C_like_1 Location: 5083 8-513 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)