myRT

myRT report for GCA_001892675.1_ASM189267v1

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Seq: MOGZ01000092.1 Escherichia coli strain 599 BN4_599_1_(paired)_contig_93, whole genome shotgun sequence (8554 bp)
Overview 1 RT 1: 2284-6380 bp Neighborhood of RT #1 [2284, 6505] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2284-2514 bp Feature: gene Location: 3113-3340 bp Feature: gene Location: 3914-5581 bp Ori: OJN15493.1 Feature: domain Description: RVT_N Location: 3962-4199 bp Feature: domain Description: RVT_N Location: 3962-41 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: domain Description: GIIM Note: maturase Location: 4943-5177 bp Feature: domain Description: GIIM Note: maturase Location: 4943-51 77 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: gene Location: 5895-6086 bp Feature: gene Location: 6083-6505 bp Ori: OJN15495.1 Feature: domain Description: DUF1380 Location: 6086-6380 bp Feature: domain Description: DUF1 380 Location: 6086-6380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MOGZ01000018.1 Escherichia coli strain 599 BN4_599_1_(paired)_contig_18, whole genome shotgun sequence (42287 bp)
Overview 1 RT 1: 29394-31512 bp Neighborhood of RT #1 [29394, 31514] IS285 group_II_RT_mat RVT-GII PHA02517 COG4930 Feature: gene Location: 29394-29876 bp Ori: OJN23401.1 Feature: domain Description: IS285 Location: 29424-29802 bp Feature: domain Description: IS2 85 Location: 2 942 4-2 9802 bp Feature: gene Location: 30015-30255 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30027-30240 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3002 7-302 40 bp Feature: gene Location: 30224-30460 bp Ori: OJN23402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30227-30410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 2 7-30410 bp Feature: gene Location: 30624-31181 bp Feature: domain Description: PHA02517 Location: 30630-31170 bp Feature: domain Description: PHA02 517 Location: 30630-31170 bp Feature: gene Location: 31290-31514 bp Ori: OJN23403.1 Feature: domain Description: COG4930 Location: 31293-31512 bp Feature: domain Description: COG4930 Location: 312 93-31512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG4930 (Predicted ATP-dependent Lon-type protease )

Seq: MOGZ01000053.1 Escherichia coli strain 599 BN4_599_1_(paired)_contig_53, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 927-6790 bp 2 RT 2: 12728-18485 bp Neighborhood of RT #1 [927, 6804] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [12728, 18485] MFS_ShiA_like PHA02517 RVT-GII GIIM Feature: gene Location: 927-2183 bp Ori: OJN18979.1 Feature: domain Description: PRK13381 Location: 933-2148 bp Feature: domain Description: PRK13 3 81 Location: 93 3 -2148 bp Feature: gene Location: 2180-3541 bp Ori: OJN18980.1 Feature: domain Description: DcuC Location: 2183-3515 bp Feature: domain Description: DcuC Location: 2183 -3 515 bp Feature: gene Location: 4187-4633 bp Ori: OJN18981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493 -4595 bp Feature: gene Location: 5166-6188 bp Ori: OJN18997.1 Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: gene Location: 6526-6804 bp Ori: OJN18982.1 Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: domain Description: DUF53 3 9 Location: 6589-6790 bp Feature: gene Location: 12728-14122 bp Ori: OJN18985.1 Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: gene Location: 15728-16216 bp Feature: domain Description: PHA02517 Location: 15731-16187 bp Feature: domain Description: PHA02517 Location: 1573 1-16187 bp Feature: gene Location: 16297-17805 bp Ori: OJN18986.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: domain Description: GIIM Note: maturase Location: 17362-17560 bp Feature: domain Description: GIIM Note: maturase Location: 173 62-17560 bp Feature: gene Location: 17774-18199 bp Feature: gene Location: 18114-18485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), MFS_ShiA_like (cd17369), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: MOGZ01000028.1 Escherichia coli strain 599 BN4_599_1_(paired)_contig_28, whole genome shotgun sequence (119185 bp)
Overview 1 RT 1: 77819-83723 bp Neighborhood of RT #1 [77819, 83839] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77819-78391 bp Ori: OJN21961.1 Feature: domain Description: Psu Location: 77837-78374 bp Feature: domain Description: Psu Location: 77837-78374 bp Feature: gene Location: 78694-79434 bp Feature: gene Location: 79431-81059 bp Ori: OJN21963.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79839-80268 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79839-80268 bp Feature: gene Location: 81052-82236 bp Ori: OJN21964.1 Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: gene Location: 82505-83839 bp Ori: OJN22001.1 Feature: domain Description: Phage_int_SAM_5 Location: 82874-83111 bp Feature: domain Description: Phage_int_SAM_5 Location: 82874 -83111 bp Feature: domain Description: INT_C_like_1 Location: 83207-83723 bp Feature: domain Description: INT_C_like_1 Location: 83207-83723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)