myRT

myRT report for GCA_001892685.1_ASM189268v1

Download annotations/find similar RTs

Seq: MOHL01000007.1 Escherichia coli strain 626 BN4_626_1_(paired)_contig_7, whole genome shotgun sequence (160392 bp)
Overview 1 RT 1: 77827-83731 bp Neighborhood of RT #1 [77827, 83847] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77827-78399 bp Ori: OJN80095.1 Feature: domain Description: Psu Location: 77845-78382 bp Feature: domain Description: Psu Location: 77845-78382 bp Feature: gene Location: 78702-79442 bp Feature: gene Location: 79439-81067 bp Ori: OJN80097.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79847-80276 bp Feature: gene Location: 81060-82244 bp Ori: OJN80098.1 Feature: domain Description: PRK09692 Location: 81066-82221 bp Feature: domain Description: PRK09692 Location: 81 066-82221 bp Feature: gene Location: 82513-83847 bp Ori: OJN80169.1 Feature: domain Description: Phage_int_SAM_5 Location: 82882-83119 bp Feature: domain Description: Phage_int_SAM_5 Location: 82882-831 1 9 bp Feature: domain Description: INT_C_like_1 Location: 83215-83731 bp Feature: domain Description: INT_C_like_1 Location: 8321 5-83731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOHL01000044.1 Escherichia coli strain 626 BN4_626_1_(paired)_contig_44, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJN74477.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA02 517 Location: 11033-11573 bp Feature: gene Location: 11748-11984 bp Ori: OJN74478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12 178 bp Feature: gene Location: 12332-12814 bp Ori: OJN74479.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS2 85 Location: 12 362 -12 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOHL01000134.1 Escherichia coli strain 626 BN4_626_1_(paired)_contig_138, whole genome shotgun sequence (1452 bp)
Overview 1 RT 1: 1-538 bp Neighborhood of RT #1 [1, 1452] RVT-GII Feature: gene Location: 1-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-53 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOHL01000045.1 Escherichia coli strain 626 BN4_626_1_(paired)_contig_45, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 10628-16335 bp 2 RT 2: 22309-28151 bp Neighborhood of RT #1 [10628, 16385] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22309, 28186] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10628-10999 bp Feature: gene Location: 10914-11339 bp Feature: gene Location: 11308-12816 bp Ori: OJN74460.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: gene Location: 12897-13385 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: gene Location: 14991-16385 bp Ori: OJN74453.1 Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: gene Location: 22309-22587 bp Ori: OJN74456.1 Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: gene Location: 22925-23947 bp Ori: OJN74463.1 Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: gene Location: 24480-24926 bp Ori: OJN74457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 786-24 888 bp Feature: gene Location: 25572-26933 bp Ori: OJN74458.1 Feature: domain Description: DcuC Location: 25575-26907 bp Feature: domain Description: DcuC Location: 25575-26907 bp Feature: gene Location: 26930-28186 bp Ori: OJN74459.1 Feature: domain Description: PRK13381 Location: 26936-28151 bp Feature: domain Description: PRK13381 Location: 26936-28151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)