myRT

myRT report for GCA_001892725.1_ASM189272v1

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Seq: MOHM01000031.1 Escherichia coli strain 544 BN4_544_1_(paired)_contig_31, whole genome shotgun sequence (118889 bp)
Overview 1 RT 1: 77823-83727 bp Neighborhood of RT #1 [77823, 83843] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77823-78395 bp Ori: OJN82631.1 Feature: domain Description: Psu Location: 77841-78378 bp Feature: domain Description: Psu Location: 77841 -78378 bp Feature: gene Location: 78698-79438 bp Feature: gene Location: 79435-81063 bp Ori: OJN82633.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79843-80272 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79843-80272 bp Feature: gene Location: 81056-82240 bp Ori: OJN82634.1 Feature: domain Description: PRK09692 Location: 81062-82217 bp Feature: domain Description: PRK09692 Location: 81 062-8221 7 bp Feature: gene Location: 82509-83843 bp Ori: OJN82671.1 Feature: domain Description: Phage_int_SAM_5 Location: 82878-83115 bp Feature: domain Description: Phage_int_SAM_5 Location: 82878-831 1 5 bp Feature: domain Description: INT_C_like_1 Location: 83211-83727 bp Feature: domain Description: INT_C_like_1 Location: 8321 1 -83727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOHM01000004.1 Escherichia coli strain 544 BN4_544_1_(paired)_contig_4, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJN86752.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA02 517 Location: 11033-11573 bp Feature: gene Location: 11748-11984 bp Ori: OJN86753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12 178 bp Feature: gene Location: 12332-12814 bp Ori: OJN86754.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS2 85 Location: 12 362 -12 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOHM01000083.1 Escherichia coli strain 544 BN4_544_1_(paired)_contig_84, whole genome shotgun sequence (8576 bp)
Overview 1 RT 1: 2284-6380 bp Neighborhood of RT #1 [2284, 6505] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2284-2514 bp Feature: gene Location: 2980-3183 bp Feature: gene Location: 3914-5581 bp Ori: OJN78878.1 Feature: domain Description: RVT_N Location: 3962-4199 bp Feature: domain Description: RVT_N Location: 3 962-4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250-4892 bp Feature: domain Description: GIIM Note: maturase Location: 4943-5177 bp Feature: domain Description: GIIM Note: maturase Location: 4943 -5177 bp Feature: domain Description: HNHc Note: nucleases Location: 5387-5546 bp Feature: domain Description: HNHc Note: nucleases Location: 53 87-5546 bp Feature: gene Location: 5895-6086 bp Feature: gene Location: 6083-6505 bp Ori: OJN78880.1 Feature: domain Description: DUF1380 Location: 6086-6380 bp Feature: domain Description: DUF13 80 Location: 6086-63 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MOHM01000065.1 Escherichia coli strain 544 BN4_544_1_(paired)_contig_66, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 10628-16335 bp 2 RT 2: 22309-28151 bp Neighborhood of RT #1 [10628, 16385] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22309, 28186] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10628-10999 bp Feature: gene Location: 10914-11339 bp Feature: gene Location: 11308-12816 bp Ori: OJN79755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: gene Location: 12897-13385 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: gene Location: 14991-16385 bp Ori: OJN79748.1 Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: gene Location: 22309-22587 bp Ori: OJN79751.1 Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: gene Location: 22925-23947 bp Ori: OJN79758.1 Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: gene Location: 24480-24926 bp Ori: OJN79752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 786-24 888 bp Feature: gene Location: 25572-26933 bp Ori: OJN79753.1 Feature: domain Description: DcuC Location: 25575-26907 bp Feature: domain Description: DcuC Location: 25575-26907 bp Feature: gene Location: 26930-28186 bp Ori: OJN79754.1 Feature: domain Description: PRK13381 Location: 26936-28151 bp Feature: domain Description: PRK13381 Location: 26936-28151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)