myRT

myRT report for GCA_001893025.1_ASM189302v1

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Seq: MOIA01000084.1 Escherichia coli strain 707 BN4_707_1_(paired)_contig_84, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 93-2206 bp Neighborhood of RT #1 [93, 2206] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: OJO51766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -1 083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 58-1 356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOIA01000007.1 Escherichia coli strain 707 BN4_707_1_(paired)_contig_7, whole genome shotgun sequence (58239 bp)
Overview 1 RT 1: 28939-35333 bp Neighborhood of RT #1 [28939, 35356] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 28939-29856 bp Ori: OJO61246.1 Feature: domain Description: PFLE_PFLC Location: 28975-29830 bp Feature: domain Description: PFLE_PFLC Location: 2 8975-2 9830 bp Feature: gene Location: 29993-30898 bp Feature: gene Location: 31384-31923 bp Ori: OJO61248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31714-31792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31714-31792 bp Feature: gene Location: 31951-32472 bp Ori: OJO61249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31957-32239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31957-32 2 39 bp Feature: domain Description: GIIM Note: maturase Location: 32287-32467 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 87-32 467 bp Feature: gene Location: 33055-34284 bp Ori: OJO61273.1 Feature: domain Description: YesM Location: 33535-34276 bp Feature: domain Description: YesM Location: 33535-342 76 bp Feature: gene Location: 34301-35356 bp Ori: OJO61250.1 Feature: domain Description: YesN Location: 34304-34694 bp Feature: domain Description: YesN Location: 34304-34694 bp Feature: domain Description: YesN Location: 35036-35333 bp Feature: domain Description: YesN Location: 35036-35333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: MOIA01000026.1 Escherichia coli strain 707 BN4_707_1_(paired)_contig_26, whole genome shotgun sequence (171592 bp)
Overview 1 RT 1: 1-4289 bp Neighborhood of RT #1 [1, 4396] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1-1121 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: gene Location: 1576-2508 bp Ori: OJO58732.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1678-2272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1678-2272 bp Feature: gene Location: 2510-3478 bp Feature: gene Location: 4124-4396 bp Ori: OJO58734.1 Feature: domain Description: PRK09678 Location: 4133-4289 bp Feature: domain Description: PRK09678 Location: 413 3 -4289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)