myRT

myRT report for GCA_001893135.1_ASM189313v1

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Seq: MOIL01000126.1 Escherichia coli strain 559 BN4_559_1_(paired)_contig_127, whole genome shotgun sequence (2397 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2180 bp Ori: OJP03835.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 740-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOIL01000039.1 Escherichia coli strain 559 BN4_559_1_(paired)_contig_40, whole genome shotgun sequence (71431 bp)
Overview 1 RT 1: 35938-39820 bp Neighborhood of RT #1 [35938, 39825] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 35938-36396 bp Ori: OJP10986.1 Feature: domain Description: dut Location: 35944-36391 bp Feature: domain Description: dut Location: 35944-36391 bp Feature: gene Location: 36503-37099 bp Ori: OJP10987.1 Feature: domain Description: slmA Location: 36509-37085 bp Feature: domain Description: slmA Location: 36509-37085 bp Feature: gene Location: 37145-38104 bp Ori: OJP10988.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37280-37829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 372 80-3782 9 bp Feature: gene Location: 38402-39043 bp Ori: OJP10989.1 Feature: domain Description: pyrE Location: 38405-39038 bp Feature: domain Description: pyrE Location: 38405-39038 bp Feature: gene Location: 39109-39825 bp Ori: OJP10990.1 Feature: domain Description: rph Location: 39112-39820 bp Feature: domain Description: rph Location: 39112 -3982 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: MOIL01000017.1 Escherichia coli strain 559 BN4_559_1_(paired)_contig_17, whole genome shotgun sequence (396487 bp)
Overview 1 RT 1: 324794-328780 bp Neighborhood of RT #1 [324794, 329682] RVT-Retrons Phage_GPA Feature: gene Location: 324794-324988 bp Feature: gene Location: 324987-325424 bp Feature: gene Location: 325548-326498 bp Ori: OJP12507.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325728-326271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 25728-3 26271 bp Feature: gene Location: 326821-327114 bp Feature: gene Location: 327394-329682 bp Ori: OJP12509.1 Feature: domain Description: Phage_GPA Location: 327793-328780 bp Feature: domain Description: Phage_GPA Location: 3 27793 -3 28780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)