myRT

myRT report for GCA_001893155.1_ASM189315v1

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Seq: MOIM01000002.1 Escherichia coli strain 642 BN4_624_1_(paired)_contig_2, whole genome shotgun sequence (141526 bp)
Overview 1 RT 1: 45451-51355 bp Neighborhood of RT #1 [45451, 51471] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 45451-46023 bp Ori: OJP27545.1 Feature: domain Description: Psu Location: 45469-46006 bp Feature: domain Description: Psu Location: 45469-46006 bp Feature: gene Location: 46326-47066 bp Feature: gene Location: 47063-48691 bp Ori: OJP27547.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47471-47900 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47471 -47900 bp Feature: gene Location: 48684-49868 bp Ori: OJP27548.1 Feature: domain Description: PRK09692 Location: 48690-49845 bp Feature: domain Description: PRK09692 Location: 48690-49845 bp Feature: gene Location: 50137-51471 bp Ori: OJP27549.1 Feature: domain Description: Phage_int_SAM_5 Location: 50506-50743 bp Feature: domain Description: Phage_int_SAM_5 Location: 50506-50743 bp Feature: domain Description: INT_C_like_1 Location: 50839-51355 bp Feature: domain Description: INT_C_like_1 Location: 50839-51 355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOIM01000006.1 Escherichia coli strain 642 BN4_624_1_(paired)_contig_6, whole genome shotgun sequence (2374 bp)
Overview 1 RT 1: 586-2218 bp Neighborhood of RT #1 [586, 2253] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 586-2253 bp Ori: OJP26745.1 Feature: domain Description: RVT_N Location: 634-871 bp Feature: domain Description: RVT_N Location: 634-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 2 -1564 bp Feature: domain Description: GIIM Note: maturase Location: 1615-1849 bp Feature: domain Description: GIIM Note: maturase Location: 1615-1849 bp Feature: domain Description: HNHc Note: nucleases Location: 2059-2218 bp Feature: domain Description: HNHc Note: nucleases Location: 2 059-2 2 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOIM01000150.1 Escherichia coli strain 642 BN4_624_1_(paired)_contig_150, whole genome shotgun sequence (1348 bp)
Overview 1 RT 1: 1-1344 bp Neighborhood of RT #1 [1, 1348] RVT-GII Feature: gene Location: 1-418 bp Feature: gene Location: 387-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-13 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOIM01000107.1 Escherichia coli strain 642 BN4_624_1_(paired)_contig_107, whole genome shotgun sequence (10498 bp)
Overview 1 RT 1: 6733-10497 bp Neighborhood of RT #1 [6733, 10498] TnpB_IS66 HTH_23 InsE RVT-GII Intron_maturas2 HNHc PRK13732 Feature: gene Location: 6733-7080 bp Ori: OJP17013.1 Feature: domain Description: TnpB_IS66 Location: 6760-7051 bp Feature: domain Description: TnpB_IS66 Location: 6760-7051 bp Feature: gene Location: 7080-7757 bp Ori: OJP17014.1 Feature: domain Description: HTH_23 Location: 7140-7251 bp Feature: domain Description: HTH_23 Location: 714 0-7251 bp Feature: domain Description: InsE Location: 7383-7737 bp Feature: domain Description: InsE Location: 7383-7737 bp Feature: gene Location: 8110-10011 bp Ori: OJP17015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8377-9208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8377-9208 bp Feature: domain Description: Intron_maturas2 Location: 9322-9580 bp Feature: domain Description: Intron_maturas2 Location: 9322-9580 bp Feature: domain Description: HNHc Note: nucleases Location: 9754-9916 bp Feature: domain Description: HNHc Note: nucleases Location: 9754 -9916 bp Feature: gene Location: 10161-10498 bp Feature: domain Description: PRK13732 Location: 10164-10497 bp Feature: domain Description: PRK13732 Location: 10164 -104 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)