myRT

myRT report for GCA_001893165.1_ASM189316v1

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Seq: MOIN01000018.1 Escherichia coli strain 489 BN4_489_1_(paired)_contig_18, whole genome shotgun sequence (53157 bp)
Overview 1 RT 1: 152-10216 bp Neighborhood of RT #1 [152, 10216] RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 152-892 bp Feature: gene Location: 889-2517 bp Ori: OJP19059.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1297-1726 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 297-1 726 bp Feature: gene Location: 2510-3694 bp Ori: OJP19060.1 Feature: domain Description: PRK09692 Location: 2516-3671 bp Feature: domain Description: PRK09692 Location: 251 6-3671 bp Feature: gene Location: 4403-5584 bp Ori: OJP19061.1 Feature: domain Description: DUF4062 Location: 4418-4745 bp Feature: domain Description: DUF4062 Location: 441 8-4745 bp Feature: gene Location: 5615-6076 bp Ori: OJP19062.1 Feature: domain Description: HTH_XRE Location: 5645-5813 bp Feature: domain Description: HTH_XRE Location: 5645-581 3 bp Feature: gene Location: 6316-6813 bp Feature: gene Location: 6950-8656 bp Ori: OJP19063.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7100-7697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 00-7697 bp Feature: gene Location: 8924-9589 bp Ori: OJP19064.1 Feature: domain Description: Resolvase Location: 8945-9362 bp Feature: domain Description: Resolvase Location: 8945-9362 bp Feature: gene Location: 9872-10216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: MOIN01000028.1 Escherichia coli strain 489 BN4_489_1_(paired)_contig_28, whole genome shotgun sequence (161099 bp)
Overview 1 RT 1: 119068-124505 bp 2 RT 2: 149661-154621 bp Neighborhood of RT #1 [119068, 124505] DUF3987 Inovirus_Gp2 RVT-GII Neighborhood of RT #2 [149661, 155079] RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 119068-120501 bp Ori: OJP17723.1 Feature: domain Description: DUF3987 Location: 119161-120238 bp Feature: domain Description: DUF3987 Location: 119161-12 02 38 bp Feature: gene Location: 121359-121922 bp Ori: OJP17724.1 Feature: domain Description: Inovirus_Gp2 Location: 121416-121857 bp Feature: domain Description: Inovirus_Gp2 Location: 12 1416-12 1857 bp Feature: gene Location: 122248-123411 bp Ori: OJP17725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122362-123049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 362 -12 3049 bp Feature: gene Location: 123398-123634 bp Feature: gene Location: 124272-124505 bp Feature: gene Location: 149661-150032 bp Feature: gene Location: 149947-150372 bp Feature: gene Location: 150341-151849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150599-151331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150599-151331 bp Feature: domain Description: GIIM Note: maturase Location: 151406-151604 bp Feature: domain Description: GIIM Note: maturase Location: 151406-151604 bp Feature: gene Location: 151930-152419 bp Feature: domain Description: PHA02517 Location: 151933-152395 bp Feature: domain Description: PHA02 517 Location: 151933-152 395 bp Feature: gene Location: 152656-155079 bp Ori: OJP17749.1 Feature: domain Description: HsdM Location: 152677-154621 bp Feature: domain Description: HsdM Location: 152 677-15462 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HsdM (COG0286)