myRT

myRT report for GCA_001893205.1_ASM189320v1

Download annotations/find similar RTs

Seq: MOIO01000030.1 Escherichia coli strain 490 BN4_490_1_(paired)_contig_30, whole genome shotgun sequence (153034 bp)
Overview 1 RT 1: 117679-124070 bp Neighborhood of RT #1 [117679, 124096] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 117679-118734 bp Ori: OJP28440.1 Feature: domain Description: YesN Location: 117682-118072 bp Feature: domain Description: YesN Location: 1 1 7682-1 1 8072 bp Feature: domain Description: YesN Location: 118414-118711 bp Feature: domain Description: YesN Location: 1 1 841 4-1 1 871 1 bp Feature: gene Location: 118751-119980 bp Ori: OJP28441.1 Feature: domain Description: YesM Location: 119231-119972 bp Feature: domain Description: YesM Location: 1 1 9231 -1 1 9972 bp Feature: gene Location: 120563-121084 bp Ori: OJP28442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120569-120851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20569-1 20851 bp Feature: domain Description: GIIM Note: maturase Location: 120899-121079 bp Feature: domain Description: GIIM Note: maturase Location: 1 20899-1 21 079 bp Feature: gene Location: 121112-121651 bp Ori: OJP28443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121442-121520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 442-1 21 520 bp Feature: gene Location: 122137-123042 bp Feature: gene Location: 123179-124096 bp Ori: OJP28445.1 Feature: domain Description: PFLE_PFLC Location: 123215-124070 bp Feature: domain Description: PFLE_PFLC Location: 1 2321 5-1 24070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: MOIO01000102.1 Escherichia coli strain 490 BN4_490_1_(paired)_contig_102, whole genome shotgun sequence (2307 bp)
Overview 1 RT 1: 93-2281 bp Neighborhood of RT #1 [93, 2281] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: OJP18533.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOIO01000032.1 Escherichia coli strain 490 BN4_490_1_(paired)_contig_32, whole genome shotgun sequence (170895 bp)
Overview 1 RT 1: 1-4289 bp Neighborhood of RT #1 [1, 4396] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1-1121 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: domain Description: Arm-DNA-bind_3 Location: 10-262 bp Feature: gene Location: 1576-2508 bp Ori: OJP28068.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1678-2272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1678-2272 bp Feature: gene Location: 2510-3478 bp Feature: gene Location: 4124-4396 bp Ori: OJP28070.1 Feature: domain Description: PRK09678 Location: 4133-4289 bp Feature: domain Description: PRK09678 Location: 413 3 -4289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)