myRT

myRT report for GCA_001893245.1_ASM189324v1

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Seq: MOIS01000104.1 Escherichia coli strain 686 BN4_686_1_(paired)_contig_104, whole genome shotgun sequence (2598 bp)
Overview 1 RT 1: 1-2400 bp Neighborhood of RT #1 [1, 2435] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-194 bp Feature: gene Location: 768-2435 bp Ori: OJP45905.1 Feature: domain Description: RVT_N Location: 816-1053 bp Feature: domain Description: RVT_N Location: 81 6-1 053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104-1746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 04-1 746 bp Feature: domain Description: GIIM Note: maturase Location: 1797-2031 bp Feature: domain Description: GIIM Note: maturase Location: 1 797-2031 bp Feature: domain Description: HNHc Note: nucleases Location: 2241-2400 bp Feature: domain Description: HNHc Note: nucleases Location: 2241 -2400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOIS01000240.1 Escherichia coli strain 686 BN4_686_1_(paired)_contig_240, whole genome shotgun sequence (889 bp)
Overview 1 RT 1: 1-607 bp Neighborhood of RT #1 [1, 831] RVT-GII GIIM Feature: gene Location: 1-831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-313 bp Feature: domain Description: GIIM Note: maturase Location: 388-607 bp Feature: domain Description: GIIM Note: maturase Location: 388-607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOIS01000117.1 Escherichia coli strain 686 BN4_686_1_(paired)_contig_117, whole genome shotgun sequence (8161 bp)
Overview 1 RT 1: 4479-7573 bp Neighborhood of RT #1 [4479, 8106] DcuC group_II_RT_mat RVT-GII DDE_Tnp_1_5 Feature: gene Location: 4479-5231 bp Feature: domain Description: DcuC Location: 4485-5205 bp Feature: domain Description: DcuC Location: 4485-5205 bp Feature: gene Location: 5877-6495 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6039-6198 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 603 9-6198 bp Feature: gene Location: 6454-6804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6457-6799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6457-6799 bp Feature: gene Location: 7183-8106 bp Ori: OJP45101.1 Feature: domain Description: DDE_Tnp_1_5 Location: 7240-7573 bp Feature: domain Description: DDE_Tnp_1_5 Location: 7240-7573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), group_II_RT_mat (TIGR04416), RVT-GII, DDE_Tnp_1_5 (pfam13737)