myRT

myRT report for GCA_001893445.1_ASM189344v1

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Seq: MOIZ01000010.1 Escherichia coli strain 494 BN4_494_1_(paired)_contig_10, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 1-1869 bp Neighborhood of RT #1 [1, 2114] RVT-GII GIIM Feature: gene Location: 1-297 bp Feature: gene Location: 212-637 bp Feature: gene Location: 606-2114 bp Ori: OJP82805.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1 596 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 -1 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOIZ01000027.1 Escherichia coli strain 494 BN4_494_1_(paired)_contig_27, whole genome shotgun sequence (153548 bp)
Overview 1 RT 1: 117678-124069 bp Neighborhood of RT #1 [117678, 124095] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 117678-118733 bp Ori: OJP81421.1 Feature: domain Description: YesN Location: 117681-118071 bp Feature: domain Description: YesN Location: 117681-118071 bp Feature: domain Description: YesN Location: 118413-118710 bp Feature: domain Description: YesN Location: 118413-118710 bp Feature: gene Location: 118750-119979 bp Ori: OJP81422.1 Feature: domain Description: YesM Location: 119230-119971 bp Feature: domain Description: YesM Location: 1192 30-119971 bp Feature: gene Location: 120562-121083 bp Ori: OJP81423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120568-120850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0568-12 0850 bp Feature: domain Description: GIIM Note: maturase Location: 120898-121078 bp Feature: domain Description: GIIM Note: maturase Location: 12 0898-12 1078 bp Feature: gene Location: 121111-121650 bp Ori: OJP81424.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121441-121519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1441-12 1519 bp Feature: gene Location: 122136-123041 bp Feature: gene Location: 123178-124095 bp Ori: OJP81426.1 Feature: domain Description: PFLE_PFLC Location: 123214-124069 bp Feature: domain Description: PFLE_PFLC Location: 12 32 14-12 4069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: MOIZ01000006.1 Escherichia coli strain 494 BN4_494_1_(paired)_contig_6, whole genome shotgun sequence (170890 bp)
Overview 1 RT 1: 166496-170032 bp Neighborhood of RT #1 [166496, 170890] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 166496-166768 bp Ori: OJP83538.1 Feature: domain Description: PRK09678 Location: 166505-166661 bp Feature: domain Description: PRK09678 Location: 166505-166661 bp Feature: gene Location: 167414-168382 bp Feature: gene Location: 168384-169316 bp Ori: OJP83540.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168486-169080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168486-169080 bp Feature: gene Location: 169771-170890 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169780-170032 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169780-17003 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)