myRT

myRT report for GCA_001893525.1_ASM189352v1

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Seq: MOJP01000058.1 Escherichia coli strain 601 BN4_601_1_(paired)_contig_58, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 93-2206 bp Neighborhood of RT #1 [93, 2206] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: OJQ59015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -1 083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 58-1 356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOJP01000006.1 Escherichia coli strain 601 BN4_601_1_(paired)_contig_6, whole genome shotgun sequence (170891 bp)
Overview 1 RT 1: 166496-170032 bp Neighborhood of RT #1 [166496, 170891] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 166496-166768 bp Ori: OJQ66443.1 Feature: domain Description: PRK09678 Location: 166505-166661 bp Feature: domain Description: PRK09678 Location: 166505-166661 bp Feature: gene Location: 167414-168382 bp Feature: gene Location: 168384-169316 bp Ori: OJQ66445.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168486-169080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168486-169080 bp Feature: gene Location: 169771-170891 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169780-170032 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169780-170032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: MOJP01000065.1 Escherichia coli strain 601 BN4_601_1_(paired)_contig_65, whole genome shotgun sequence (58239 bp)
Overview 1 RT 1: 22884-29275 bp Neighborhood of RT #1 [22884, 29301] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 22884-23939 bp Ori: OJQ57926.1 Feature: domain Description: YesN Location: 22887-23277 bp Feature: domain Description: YesN Location: 22887-23 277 bp Feature: domain Description: YesN Location: 23619-23916 bp Feature: domain Description: YesN Location: 23 619-23 916 bp Feature: gene Location: 23956-25185 bp Ori: OJQ57927.1 Feature: domain Description: YesM Location: 24436-25177 bp Feature: domain Description: YesM Location: 2443 6-25177 bp Feature: gene Location: 25768-26289 bp Ori: OJQ57928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25774-26056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25774-26056 bp Feature: domain Description: GIIM Note: maturase Location: 26104-26284 bp Feature: domain Description: GIIM Note: maturase Location: 26104-26284 bp Feature: gene Location: 26317-26856 bp Ori: OJQ57929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26647-26725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26647-26725 bp Feature: gene Location: 27342-28247 bp Feature: gene Location: 28384-29301 bp Ori: OJQ57931.1 Feature: domain Description: PFLE_PFLC Location: 28420-29275 bp Feature: domain Description: PFLE_PFLC Location: 28420-29275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)