myRT

myRT report for GCA_001893555.1_ASM189355v1

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Seq: MOJY01000033.1 Escherichia coli strain 660 BN4_660_1_(paired)_contig_33, whole genome shotgun sequence (27675 bp)
Overview 1 RT 1: 1343-7206 bp Neighborhood of RT #1 [1343, 7220] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 1343-2599 bp Ori: OJQ99306.1 Feature: domain Description: PRK13381 Location: 1349-2564 bp Feature: domain Description: PRK1 3381 Location: 1 349-2564 bp Feature: gene Location: 2596-3957 bp Ori: OJQ99307.1 Feature: domain Description: DcuC Location: 2599-3931 bp Feature: domain Description: DcuC Location: 2599-3931 bp Feature: gene Location: 4603-5049 bp Ori: OJQ99308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4909-5011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4909-501 1 bp Feature: gene Location: 5582-6604 bp Ori: OJQ99323.1 Feature: domain Description: Asparaginase_2 Location: 5663-6596 bp Feature: domain Description: Asparaginase_2 Location: 5663-6596 bp Feature: gene Location: 6942-7220 bp Ori: OJQ99309.1 Feature: domain Description: DUF5339 Location: 7005-7206 bp Feature: domain Description: DUF5339 Location: 7005-7206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274)

Seq: MOJY01000002.1 Escherichia coli strain 660 BN4_660_1_(paired)_contig_2, whole genome shotgun sequence (168453 bp)
Overview 1 RT 1: 13090-17068 bp Neighborhood of RT #1 [13090, 17970] RVT-Retrons Phage_GPA Feature: gene Location: 13090-13284 bp Feature: gene Location: 13283-13720 bp Feature: gene Location: 13845-14795 bp Ori: OJR03038.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14025-14568 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1402 5-14568 bp Feature: gene Location: 15118-15411 bp Feature: gene Location: 15682-17970 bp Ori: OJR02902.1 Feature: domain Description: Phage_GPA Location: 16081-17068 bp Feature: domain Description: Phage_GPA Location: 16081-17068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_GPA (pfam05840)

Seq: MOJY01000067.1 Escherichia coli strain 660 BN4_660_1_(paired)_contig_67, whole genome shotgun sequence (25089 bp)
Overview 1 RT 1: 4322-13005 bp Neighborhood of RT #1 [4322, 13005] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM Feature: gene Location: 4322-10057 bp Ori: OJQ95105.1 Feature: domain Description: DUF4011 Location: 4412-5246 bp Feature: domain Description: DUF4011 Location: 4412-5246 bp Feature: domain Description: DEXXQc_SF1 Location: 5603-8705 bp Feature: domain Description: DEXXQc_SF1 Location: 5603 -8705 bp Feature: domain Description: SF1_C_Upf1 Location: 8714-9242 bp Feature: domain Description: SF1_C_Upf1 Location: 8714-9242 bp Feature: domain Description: MTES_1575 Location: 9371-9662 bp Feature: domain Description: MTES_1575 Location: 93 71-9662 bp Feature: gene Location: 10284-10490 bp Ori: OJQ95119.1 Feature: domain Description: PHA02517 Location: 10287-10485 bp Feature: domain Description: PHA02517 Location: 10287-10485 bp Feature: gene Location: 10817-12325 bp Ori: OJQ95106.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11075-11807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11075-11807 bp Feature: domain Description: GIIM Note: maturase Location: 11882-12080 bp Feature: domain Description: GIIM Note: maturase Location: 11882-12080 bp Feature: gene Location: 12294-12719 bp Feature: gene Location: 12634-13005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)