myRT

myRT report for GCA_001893695.1_ASM189369v1

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Seq: MOKK01000060.1 Escherichia coli strain 613 BN4_613_1_(paired)_contig_60, whole genome shotgun sequence (42207 bp)
Overview 1 RT 1: 10694-12740 bp Neighborhood of RT #1 [10694, 12814] COG4930 PHA02517 RVT-GII group_II_RT_mat IS285 Feature: gene Location: 10694-10918 bp Ori: OJR57435.1 Feature: domain Description: COG4930 Location: 10697-10916 bp Feature: domain Description: COG4930 Location: 1 0697-1 091 6 bp Feature: gene Location: 11027-11584 bp Feature: domain Description: PHA02517 Location: 11033-11573 bp Feature: domain Description: PHA0251 7 Location: 1 1 033-1 1 573 bp Feature: gene Location: 11748-11984 bp Ori: OJR57436.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11751-11934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 751 -1 1 934 bp Feature: gene Location: 11953-12193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11965-12178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 965-1 21 78 bp Feature: gene Location: 12332-12814 bp Ori: OJR57437.1 Feature: domain Description: IS285 Location: 12362-12740 bp Feature: domain Description: IS285 Location: 1 2362-1 2740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: MOKK01000009.1 Escherichia coli strain 613 BN4_613_1_(paired)_contig_9, whole genome shotgun sequence (160274 bp)
Overview 1 RT 1: 76424-82427 bp Neighborhood of RT #1 [76424, 82444] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 76424-77758 bp Ori: OJR62445.1 Feature: domain Description: Phage_int_SAM_5 Location: 76793-77030 bp Feature: domain Description: Phage_int_SAM_5 Location: 76793-77030 bp Feature: domain Description: INT_C_like_1 Location: 77126-77642 bp Feature: domain Description: INT_C_like_1 Location: 7712 6-77642 bp Feature: gene Location: 78027-79211 bp Ori: OJR62370.1 Feature: domain Description: PRK09692 Location: 78033-79188 bp Feature: domain Description: PRK09692 Location: 78033-79188 bp Feature: gene Location: 79204-80832 bp Ori: OJR62371.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79612-80041 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79612 -80041 bp Feature: gene Location: 80829-81569 bp Feature: gene Location: 81872-82444 bp Ori: OJR62373.1 Feature: domain Description: Psu Location: 81890-82427 bp Feature: domain Description: Psu Location: 81890-82 42 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: MOKK01000079.1 Escherichia coli strain 613 BN4_613_1_(paired)_contig_79, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 10628-16335 bp 2 RT 2: 22309-28151 bp Neighborhood of RT #1 [10628, 16385] RVT-GII GIIM PHA02517 MFS_ShiA_like Neighborhood of RT #2 [22309, 28186] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 10628-10999 bp Feature: gene Location: 10914-11339 bp Feature: gene Location: 11308-12816 bp Ori: OJR56425.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12298 bp Feature: domain Description: GIIM Note: maturase Location: 12373-12571 bp Feature: domain Description: GIIM Note: maturase Location: 123 73 -12571 bp Feature: gene Location: 12897-13385 bp Feature: domain Description: PHA02517 Location: 12900-13356 bp Feature: domain Description: PHA02517 Location: 12900-13 3 56 bp Feature: gene Location: 14991-16385 bp Ori: OJR56418.1 Feature: domain Description: MFS_ShiA_like Location: 15087-16335 bp Feature: domain Description: MFS_ShiA_like Location: 15087-163 3 5 bp Feature: gene Location: 22309-22587 bp Ori: OJR56421.1 Feature: domain Description: DUF5339 Location: 22372-22573 bp Feature: domain Description: DUF53 3 9 Location: 223 72-22573 bp Feature: gene Location: 22925-23947 bp Ori: OJR56428.1 Feature: domain Description: Asparaginase_2 Location: 23006-23939 bp Feature: domain Description: Asparaginase_2 Location: 23 006-23 93 9 bp Feature: gene Location: 24480-24926 bp Ori: OJR56422.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24786-24888 bp Feature: gene Location: 25572-26933 bp Ori: OJR56423.1 Feature: domain Description: DcuC Location: 25575-26907 bp Feature: domain Description: DcuC Location: 25575-26907 bp Feature: gene Location: 26930-28186 bp Ori: OJR56424.1 Feature: domain Description: PRK13381 Location: 26936-28151 bp Feature: domain Description: PRK13 3 81 Location: 2693 6-28151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), MFS_ShiA_like (cd17369), DUF5339 (pfam17274), Asparaginase_2 (pfam01112), DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)