myRT

myRT report for GCA_001893905.1_ASM189390v1

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Seq: MOIW01000035.1 Escherichia coli strain 555 BN4_555_1_(paired)_contig_35, whole genome shotgun sequence (18707 bp)
Overview 1 RT 1: 1026-11944 bp Neighborhood of RT #1 [1026, 11949] bcsA PRK11114 RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 1026-3131 bp Ori: OJP68583.1 Feature: domain Description: bcsA Location: 1068-3117 bp Feature: domain Description: bcsA Location: 1 068-31 1 7 bp Feature: gene Location: 3195-5345 bp Ori: OJP68584.1 Feature: domain Description: PRK11114 Location: 3255-5328 bp Feature: domain Description: PRK1 1 1 1 4 Location: 3255-5328 bp Feature: gene Location: 6089-7435 bp Ori: OJP68585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6377-6995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6377-6995 bp Feature: domain Description: GIIM Note: maturase Location: 7043-7274 bp Feature: domain Description: GIIM Note: maturase Location: 7043-7274 bp Feature: gene Location: 7590-8129 bp Ori: OJP68586.1 Feature: domain Description: RAYT Location: 7668-8031 bp Feature: domain Description: RAYT Location: 7668-8031 bp Feature: gene Location: 8476-11949 bp Ori: OJP68587.1 Feature: domain Description: PRK11447 Location: 8479-11944 bp Feature: domain Description: PRK1 1 447 Location: 8479-1 1 944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bcsA (PRK11498), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)

Seq: MOIW01000170.1 Escherichia coli strain 555 BN4_555_1_(paired)_contig_170, whole genome shotgun sequence (951 bp)
Overview 1 RT 1: 1-586 bp Neighborhood of RT #1 [1, 612] RVT-GII Feature: gene Location: 1-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOIW01000062.1 Escherichia coli strain 555 BN4_555_1_(paired)_contig_62, whole genome shotgun sequence (47551 bp)
Overview 1 RT 1: 30562-41015 bp Neighborhood of RT #1 [30562, 41134] COG4688 COG4688 RVT-UG3 RVT-UG8 BRR2 BRR2 DUF1837 Feature: gene Location: 30562-32595 bp Ori: OJP65432.1 Feature: domain Description: COG4688 Location: 30565-31471 bp Feature: domain Description: COG4688 Location: 3 0565-3 1471 bp Feature: domain Description: COG4688 Location: 31846-32569 bp Feature: domain Description: COG4688 Location: 3 1846-3 2569 bp Feature: gene Location: 32588-33007 bp Feature: gene Location: 33059-34408 bp Ori: OJP65434.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 33515-33992 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 3 515-3 3 992 bp Feature: gene Location: 34401-36443 bp Ori: OJP65435.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 35013-35460 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3 5013 -3 5460 bp Feature: gene Location: 37171-40326 bp Ori: OJP65436.1 Feature: domain Description: BRR2 Location: 37894-38470 bp Feature: domain Description: BRR2 Location: 3 7894-3 8470 bp Feature: domain Description: BRR2 Location: 38905-39151 bp Feature: domain Description: BRR2 Location: 3 8905-3 9151 bp Feature: gene Location: 40316-41134 bp Ori: OJP65437.1 Feature: domain Description: DUF1837 Location: 40544-41015 bp Feature: domain Description: DUF183 7 Location: 40544-41015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-UG3, RVT-UG8, BRR2 (COG1204), DUF1837 (pfam08878)