myRT

myRT report for GCA_001893915.1_ASM189391v1

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Seq: MOJA01000177.1 Escherichia coli strain 549 BN4_549_1_(paired)_contig_178, whole genome shotgun sequence (2535 bp)
Overview 1 RT 1: 15-2094 bp Neighborhood of RT #1 [15, 2457] RVT-GII GIIM PHA02517 Feature: gene Location: 15-440 bp Feature: gene Location: 409-1917 bp Ori: OJP82119.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-1 399 bp Feature: domain Description: GIIM Note: maturase Location: 1474-1672 bp Feature: domain Description: GIIM Note: maturase Location: 1 474-1 672 bp Feature: gene Location: 1998-2457 bp Feature: domain Description: PHA02517 Location: 2001-2094 bp Feature: domain Description: PHA0251 7 Location: 2001 -2094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MOJA01000084.1 Escherichia coli strain 549 BN4_549_1_(paired)_contig_84, whole genome shotgun sequence (2498 bp)
Overview 1 RT 1: 1-2381 bp Neighborhood of RT #1 [1, 2416] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-175 bp Feature: gene Location: 749-2416 bp Ori: OJP84270.1 Feature: domain Description: RVT_N Location: 797-1034 bp Feature: domain Description: RVT_N Location: 797-1034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-172 7 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1778-2 012 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 2 2 -2 381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOJA01000030.1 Escherichia coli strain 549 BN4_549_1_(paired)_contig_30, whole genome shotgun sequence (141631 bp)
Overview 1 RT 1: 45556-51460 bp Neighborhood of RT #1 [45556, 51576] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 45556-46128 bp Ori: OJP89481.1 Feature: domain Description: Psu Location: 45574-46111 bp Feature: domain Description: Psu Location: 45574-46111 bp Feature: gene Location: 46431-47171 bp Feature: gene Location: 47168-48796 bp Ori: OJP89483.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47576-48005 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47576-48005 bp Feature: gene Location: 48789-49973 bp Ori: OJP89484.1 Feature: domain Description: PRK09692 Location: 48795-49950 bp Feature: domain Description: PRK09692 Location: 48795-49950 bp Feature: gene Location: 50242-51576 bp Ori: OJP89485.1 Feature: domain Description: Phage_int_SAM_5 Location: 50611-50848 bp Feature: domain Description: Phage_int_SAM_5 Location: 50611-50848 bp Feature: domain Description: INT_C_like_1 Location: 50944-51460 bp Feature: domain Description: INT_C_like_1 Location: 50944-51460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: MOJA01000237.1 Escherichia coli strain 549 BN4_549_1_(paired)_contig_238, whole genome shotgun sequence (735 bp)
Overview 1 RT 1: 106-736 bp Neighborhood of RT #1 [106, 735] RVT-GII Feature: gene Location: 106-735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII