myRT

myRT report for GCA_001893955.1_ASM189395v1

Download annotations/find similar RTs

Seq: MOJF01000034.1 Escherichia coli strain 598 BN4_598_1_(paired)_contig_34, whole genome shotgun sequence (2305 bp)
Overview 1 RT 1: 93-2281 bp Neighborhood of RT #1 [93, 2281] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: OJQ03703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 -1 083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 58-1 356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOJF01000016.1 Escherichia coli strain 598 BN4_598_1_(paired)_contig_16, whole genome shotgun sequence (153034 bp)
Overview 1 RT 1: 28939-35333 bp Neighborhood of RT #1 [28939, 35356] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 28939-29856 bp Ori: OJQ05853.1 Feature: domain Description: PFLE_PFLC Location: 28975-29830 bp Feature: domain Description: PFLE_PFLC Location: 2 8975-2 9830 bp Feature: gene Location: 29993-30898 bp Feature: gene Location: 31384-31923 bp Ori: OJQ05855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31714-31792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31714-31792 bp Feature: gene Location: 31951-32472 bp Ori: OJQ05856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31957-32239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31957-32 2 39 bp Feature: domain Description: GIIM Note: maturase Location: 32287-32467 bp Feature: domain Description: GIIM Note: maturase Location: 32 2 87-32 467 bp Feature: gene Location: 33055-34284 bp Ori: OJQ05857.1 Feature: domain Description: YesM Location: 33535-34276 bp Feature: domain Description: YesM Location: 33535-342 76 bp Feature: gene Location: 34301-35356 bp Ori: OJQ05858.1 Feature: domain Description: YesN Location: 34304-34694 bp Feature: domain Description: YesN Location: 34304-34694 bp Feature: domain Description: YesN Location: 35036-35333 bp Feature: domain Description: YesN Location: 35036-35333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: MOJF01000036.1 Escherichia coli strain 598 BN4_598_1_(paired)_contig_36, whole genome shotgun sequence (171128 bp)
Overview 1 RT 1: 166657-170193 bp Neighborhood of RT #1 [166657, 171073] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 166657-166929 bp Ori: OJQ03499.1 Feature: domain Description: PRK09678 Location: 166666-166822 bp Feature: domain Description: PRK09678 Location: 166666-166822 bp Feature: gene Location: 167575-168543 bp Feature: gene Location: 168545-169477 bp Ori: OJQ03501.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168647-169241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 168647-169241 bp Feature: gene Location: 169932-171073 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169941-170193 bp Feature: domain Description: Arm-DNA-bind_3 Location: 169941-170193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)