myRT

myRT report for GCA_001894125.1_ASM189412v1

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Seq: MOKE01000070.1 Escherichia coli strain 713 BN4_713_1_(paired)_contig_70, whole genome shotgun sequence (16602 bp)
Overview 1 RT 1: 13148-16096 bp Neighborhood of RT #1 [13148, 16096] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 13148-13342 bp Ori: OJR27394.1 Feature: domain Description: InsE Location: 13199-13307 bp Feature: domain Description: InsE Location: 1 31 99-1 3307 bp Feature: gene Location: 13345-13824 bp Feature: domain Description: PHA02517 Location: 13348-13822 bp Feature: domain Description: PHA0251 7 Location: 1 3348-1 3822 bp Feature: gene Location: 13908-15416 bp Ori: OJR27390.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14166-14898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 66-1 4898 bp Feature: domain Description: GIIM Note: maturase Location: 14973-15171 bp Feature: domain Description: GIIM Note: maturase Location: 1 4973-1 51 71 bp Feature: gene Location: 15385-15810 bp Feature: gene Location: 15725-16096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOKE01000030.1 Escherichia coli strain 713 BN4_713_1_(paired)_contig_30, whole genome shotgun sequence (8576 bp)
Overview 1 RT 1: 2072-6969 bp Neighborhood of RT #1 [2072, 7706] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Feature: gene Location: 2072-2494 bp Ori: OJR31970.1 Feature: domain Description: DUF1380 Location: 2075-2369 bp Feature: domain Description: DUF1380 Location: 2 075-2 369 bp Feature: gene Location: 2491-2682 bp Feature: gene Location: 2996-4663 bp Ori: OJR31972.1 Feature: domain Description: RVT_N Location: 3044-3281 bp Feature: domain Description: RVT_N Location: 3044-32 81 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332-3974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332 -3974 bp Feature: domain Description: GIIM Note: maturase Location: 4025-4259 bp Feature: domain Description: GIIM Note: maturase Location: 402 5-42 59 bp Feature: domain Description: HNHc Note: nucleases Location: 4469-4628 bp Feature: domain Description: HNHc Note: nucleases Location: 4469-462 8 bp Feature: gene Location: 6063-6293 bp Feature: gene Location: 6345-7706 bp Ori: OJR31974.1 Feature: domain Description: DUF3560 Location: 6612-6969 bp Feature: domain Description: DUF3560 Location: 6612 -6969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)

Seq: MOKE01000062.1 Escherichia coli strain 713 BN4_713_1_(paired)_contig_62, whole genome shotgun sequence (75525 bp)
Overview 1 RT 1: 49806-53689 bp Neighborhood of RT #1 [49806, 53694] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49806-50264 bp Ori: OJR27867.1 Feature: domain Description: dut Location: 49812-50259 bp Feature: domain Description: dut Location: 49812-50259 bp Feature: gene Location: 50371-50967 bp Ori: OJR27868.1 Feature: domain Description: slmA Location: 50377-50953 bp Feature: domain Description: slmA Location: 503 77-50953 bp Feature: gene Location: 51013-51972 bp Ori: OJR27869.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51148-51697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51148-51697 bp Feature: gene Location: 52270-52911 bp Ori: OJR27870.1 Feature: domain Description: pyrE Location: 52273-52906 bp Feature: domain Description: pyrE Location: 52273 -52906 bp Feature: gene Location: 52978-53694 bp Ori: OJR27871.1 Feature: domain Description: rph Location: 52981-53689 bp Feature: domain Description: rph Location: 52981-53 689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: MOKE01000064.1 Escherichia coli strain 713 BN4_713_1_(paired)_contig_64, whole genome shotgun sequence (20176 bp)
Overview 1 RT 1: 15767-19658 bp Neighborhood of RT #1 [15767, 19885] PRK10597 SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 15767-16015 bp Ori: OJR27723.1 Feature: domain Description: PRK10597 Location: 15770-16010 bp Feature: domain Description: PRK10597 Location: 15770-16010 bp Feature: gene Location: 16238-16789 bp Ori: OJR27724.1 Feature: domain Description: SLATT_5 Location: 16244-16760 bp Feature: domain Description: SLATT_5 Location: 1624 4 -16760 bp Feature: gene Location: 16767-18137 bp Ori: OJR27725.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16995-17601 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16995-17601 bp Feature: gene Location: 18245-18532 bp Feature: gene Location: 18575-19885 bp Ori: OJR27726.1 Feature: domain Description: Peptidase_S74 Location: 19511-19658 bp Feature: domain Description: Peptidase_S74 Location: 19511-19658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)