myRT

myRT report for GCA_001894145.1_ASM189414v1

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Seq: MOKJ01000054.1 Escherichia coli strain 444 BN4_444_1_(paired)_contig_54, whole genome shotgun sequence (16494 bp)
Overview 1 RT 1: 21-2599 bp Neighborhood of RT #1 [21, 2616] RVT-GII PRK10276 Feature: gene Location: 21-203 bp Feature: gene Location: 292-1302 bp Ori: OJR68208.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-91 0 bp Feature: gene Location: 1414-1608 bp Feature: gene Location: 2185-2616 bp Ori: OJR68209.1 Feature: domain Description: PRK10276 Location: 2236-2599 bp Feature: domain Description: PRK1 0276 Location: 2236-2599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: MOKJ01000208.1 Escherichia coli strain 444 BN4_444_1_(paired)_contig_208, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 711-2343 bp Neighborhood of RT #1 [711, 2378] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 711-2378 bp Ori: OJR59458.1 Feature: domain Description: RVT_N Location: 759-996 bp Feature: domain Description: RVT_N Location: 759-996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1689 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1974 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1974 bp Feature: domain Description: HNHc Note: nucleases Location: 2184-2343 bp Feature: domain Description: HNHc Note: nucleases Location: 2 184-2 343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOKJ01000046.1 Escherichia coli strain 444 BN4_444_1_(paired)_contig_46, whole genome shotgun sequence (27675 bp)
Overview 1 RT 1: 20456-26298 bp Neighborhood of RT #1 [20456, 26333] DUF5339 Asparaginase_2 RVT-GII DcuC PRK13381 Feature: gene Location: 20456-20734 bp Ori: OJR68985.1 Feature: domain Description: DUF5339 Location: 20519-20720 bp Feature: domain Description: DUF53 3 9 Location: 20519-20720 bp Feature: gene Location: 21072-22094 bp Ori: OJR68990.1 Feature: domain Description: Asparaginase_2 Location: 21153-22086 bp Feature: domain Description: Asparaginase_2 Location: 21153 -22086 bp Feature: gene Location: 22627-23073 bp Ori: OJR68986.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22933-23035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293 3 -23 03 5 bp Feature: gene Location: 23719-25080 bp Ori: OJR68987.1 Feature: domain Description: DcuC Location: 23722-25054 bp Feature: domain Description: DcuC Location: 23 722-25054 bp Feature: gene Location: 25077-26333 bp Ori: OJR68988.1 Feature: domain Description: PRK13381 Location: 25083-26298 bp Feature: domain Description: PRK13 3 81 Location: 25083 -26298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5339 (pfam17274), Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771), PRK13381 (peptidase T; Provisional)

Seq: MOKJ01000125.1 Escherichia coli strain 444 BN4_444_1_(paired)_contig_125, whole genome shotgun sequence (13119 bp)
Overview 1 RT 1: 30-2785 bp Neighborhood of RT #1 [30, 2785] PHA02517 RVT-GII GIIM Feature: gene Location: 30-519 bp Feature: domain Description: PHA02517 Location: 33-495 bp Feature: domain Description: PHA02517 Location: 33-4 95 bp Feature: gene Location: 600-2108 bp Ori: OJR64193.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1590 bp Feature: domain Description: GIIM Note: maturase Location: 1665-1863 bp Feature: domain Description: GIIM Note: maturase Location: 1665-1863 bp Feature: gene Location: 2077-2502 bp Feature: gene Location: 2417-2785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOKJ01000039.1 Escherichia coli strain 444 BN4_444_1_(paired)_contig_39, whole genome shotgun sequence (125844 bp)
Overview 1 RT 1: 1-6986 bp 2 RT 2: 44355-46836 bp Neighborhood of RT #1 [1, 7702] AidA YeeP RVT-UG1 GerD HEPN_Apea Neighborhood of RT #2 [44355, 46841] IS285 group_II_RT_mat RVT-GII InsE PHA02517 Feature: gene Location: 1-324 bp Ori: OJR69319.1 Feature: domain Description: AidA Location: 40-325 bp Feature: domain Description: AidA Location: 40-325 bp Feature: gene Location: 697-1569 bp Ori: OJR69320.1 Feature: domain Description: YeeP Location: 700-1567 bp Feature: domain Description: YeeP Location: 700-15 67 bp Feature: gene Location: 2173-5862 bp Ori: OJR69321.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2785-3295 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2785 -3295 bp Feature: gene Location: 5871-6305 bp Ori: OJR69322.1 Feature: domain Description: GerD Location: 5949-6063 bp Feature: domain Description: GerD Location: 5 949-6063 bp Feature: gene Location: 6602-7702 bp Ori: OJR69323.1 Feature: domain Description: HEPN_Apea Location: 6671-6986 bp Feature: domain Description: HEPN_Apea Location: 6671-6986 bp Feature: gene Location: 44355-44837 bp Ori: OJR69353.1 Feature: domain Description: IS285 Location: 44385-44763 bp Feature: domain Description: IS285 Location: 44385 -44763 bp Feature: gene Location: 44976-45216 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 44988-45201 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 44988-45 201 bp Feature: gene Location: 45185-45421 bp Ori: OJR69354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45188-45368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 188-45 368 bp Feature: gene Location: 45697-45999 bp Ori: OJR69355.1 Feature: domain Description: InsE Location: 45700-45985 bp Feature: domain Description: InsE Location: 45 700-45 985 bp Feature: gene Location: 46035-46841 bp Ori: OJR69356.1 Feature: domain Description: PHA02517 Location: 46050-46836 bp Feature: domain Description: PHA025 17 Location: 4605 0-46836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AidA (COG3468), YeeP (COG3596), RVT-UG1, GerD (pfam17898), HEPN_Apea (pfam18739), IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)