myRT

myRT report for GCA_001894255.1_ASM189425v1

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Seq: MOJE01000006.1 Escherichia coli strain 498 BN4_498_1_(paired)_contig_6, whole genome shotgun sequence (240202 bp)
Overview 1 RT 1: 229448-234180 bp Neighborhood of RT #1 [229448, 234188] RVT-GII GIIM PHA02517 LldP Feature: gene Location: 229448-229819 bp Feature: gene Location: 229734-230159 bp Feature: gene Location: 230128-231636 bp Ori: OJQ15493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230386-231118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230386-231 1 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 231193-231391 bp Feature: domain Description: GIIM Note: maturase Location: 231 1 93-231 391 bp Feature: gene Location: 231717-232205 bp Feature: domain Description: PHA02517 Location: 231720-232194 bp Feature: domain Description: PHA0251 7 Location: 231 720-2321 94 bp Feature: gene Location: 232635-234188 bp Ori: OJQ15473.1 Feature: domain Description: LldP Location: 232647-234180 bp Feature: domain Description: LldP Location: 232647-2341 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LldP (COG1620)

Seq: MOJE01000038.1 Escherichia coli strain 498 BN4_498_1_(paired)_contig_38, whole genome shotgun sequence (131923 bp)
Overview 1 RT 1: 77822-88761 bp Neighborhood of RT #1 [77822, 88761] Psu RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 77822-78394 bp Ori: OJQ09850.1 Feature: domain Description: Psu Location: 77840-78377 bp Feature: domain Description: Psu Location: 77840-78377 bp Feature: gene Location: 78697-79437 bp Feature: gene Location: 79434-81062 bp Ori: OJQ09852.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79842-80271 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79842 -802 71 bp Feature: gene Location: 81055-82239 bp Ori: OJQ09853.1 Feature: domain Description: PRK09692 Location: 81061-82216 bp Feature: domain Description: PRK09692 Location: 81061-82 2 16 bp Feature: gene Location: 82948-84129 bp Ori: OJQ09854.1 Feature: domain Description: DUF4062 Location: 82963-83290 bp Feature: domain Description: DUF4062 Location: 82 963-832 90 bp Feature: gene Location: 84160-84621 bp Ori: OJQ09855.1 Feature: domain Description: HTH_XRE Location: 84190-84358 bp Feature: domain Description: HTH_XRE Location: 84190-84358 bp Feature: gene Location: 84861-85358 bp Feature: gene Location: 85495-87201 bp Ori: OJQ09856.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85645-86242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85645-862 42 bp Feature: gene Location: 87469-88134 bp Ori: OJQ09857.1 Feature: domain Description: Resolvase Location: 87490-87907 bp Feature: domain Description: Resolvase Location: 87490-87907 bp Feature: gene Location: 88417-88761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: MOJE01000049.1 Escherichia coli strain 498 BN4_498_1_(paired)_contig_49, whole genome shotgun sequence (78204 bp)
Overview 1 RT 1: 27590-31838 bp Neighborhood of RT #1 [27590, 31840] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 27590-28012 bp Ori: OJQ08950.1 Feature: domain Description: DUF1380 Location: 27593-27887 bp Feature: domain Description: DUF13 80 Location: 27593 -27887 bp Feature: gene Location: 28009-28200 bp Feature: gene Location: 28478-30145 bp Ori: OJQ08952.1 Feature: domain Description: RVT_N Location: 28526-28763 bp Feature: domain Description: RVT_N Location: 28526-28763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28814-29456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28814-29456 bp Feature: domain Description: GIIM Note: maturase Location: 29507-29741 bp Feature: domain Description: GIIM Note: maturase Location: 29507-29741 bp Feature: domain Description: HNHc Note: nucleases Location: 29951-30110 bp Feature: domain Description: HNHc Note: nucleases Location: 29951-3 0110 bp Feature: gene Location: 30719-31192 bp Feature: gene Location: 31313-31840 bp Ori: OJQ08954.1 Feature: domain Description: PRK13732 Location: 31316-31838 bp Feature: domain Description: PRK13 73 2 Location: 3 13 16-3 183 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)