myRT

myRT report for GCA_001894385.1_ASM189438v1

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Seq: MOJW01000071.1 Escherichia coli strain 659 BN4_659_1_(paired)_contig_71, whole genome shotgun sequence (13366 bp)
Overview 1 RT 1: 4324-13004 bp Neighborhood of RT #1 [4324, 13004] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM Feature: gene Location: 4324-10059 bp Ori: OJQ84587.1 Feature: domain Description: DUF4011 Location: 4414-5248 bp Feature: domain Description: DUF401 1 Location: 441 4-5248 bp Feature: domain Description: DEXXQc_SF1 Location: 5605-8707 bp Feature: domain Description: DEXXQc_SF1 Location: 5605-8707 bp Feature: domain Description: SF1_C_Upf1 Location: 8716-9244 bp Feature: domain Description: SF1 _C_Upf1 Location: 871 6-9244 bp Feature: domain Description: MTES_1575 Location: 9373-9664 bp Feature: domain Description: MTES_1 575 Location: 9373-9664 bp Feature: gene Location: 10286-10492 bp Ori: OJQ84591.1 Feature: domain Description: PHA02517 Location: 10289-10487 bp Feature: domain Description: PHA0251 7 Location: 1 0289-1 0487 bp Feature: gene Location: 10819-12327 bp Ori: OJQ84588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11077-11809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 077-1 1 809 bp Feature: domain Description: GIIM Note: maturase Location: 11884-12082 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 884-1 2082 bp Feature: gene Location: 12296-12721 bp Feature: gene Location: 12636-13004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MOJW01000108.1 Escherichia coli strain 659 BN4_659_1_(paired)_contig_108, whole genome shotgun sequence (8520 bp)
Overview 1 RT 1: 738-8519 bp Neighborhood of RT #1 [738, 8520] bcsA PRK11114 RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 738-2843 bp Ori: OJQ82657.1 Feature: domain Description: bcsA Location: 780-2829 bp Feature: domain Description: bcsA Location: 780-2 82 9 bp Feature: gene Location: 2907-5057 bp Ori: OJQ82658.1 Feature: domain Description: PRK11114 Location: 2967-5040 bp Feature: domain Description: PRK11114 Location: 2 967-5040 bp Feature: gene Location: 5801-7147 bp Ori: OJQ82659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6089-6707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6089-6707 bp Feature: domain Description: GIIM Note: maturase Location: 6755-6986 bp Feature: domain Description: GIIM Note: maturase Location: 6755-6986 bp Feature: gene Location: 7300-7839 bp Ori: OJQ82661.1 Feature: domain Description: RAYT Location: 7378-7741 bp Feature: domain Description: RAYT Location: 7378-7741 bp Feature: gene Location: 8186-8520 bp Ori: OJQ82660.1 Feature: domain Description: PRK11447 Location: 8189-8519 bp Feature: domain Description: PRK11447 Location: 8189-8519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bcsA (PRK11498), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)

Seq: MOJW01000045.1 Escherichia coli strain 659 BN4_659_1_(paired)_contig_45, whole genome shotgun sequence (59497 bp)
Overview 1 RT 1: 31776-36136 bp Neighborhood of RT #1 [31776, 36138] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 31776-32876 bp Ori: OJQ91777.1 Feature: domain Description: D Location: 31788-32865 bp Feature: domain Description: D Location: 3 1788-3 2865 bp Feature: gene Location: 32967-33185 bp Ori: OJQ91778.1 Feature: domain Description: PRK09678 Location: 32970-33168 bp Feature: domain Description: PRK09678 Location: 3 2970-3 3 168 bp Feature: gene Location: 33589-34362 bp Ori: OJQ91779.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 33724-34177 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3 3 724-3 4177 bp Feature: gene Location: 35048-35530 bp Ori: OJQ91780.1 Feature: domain Description: SmpB Location: 35078-35525 bp Feature: domain Description: SmpB Location: 3 5078-3 5525 bp Feature: gene Location: 35701-36138 bp Ori: OJQ91805.1 Feature: domain Description: PRK10724 Location: 35704-36136 bp Feature: domain Description: PRK10724 Location: 3 5704-3 613 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)