myRT

myRT report for GCA_001894475.1_ASM189447v1

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Seq: MOKM01000018.1 Escherichia coli strain 687 BN4_687_1_(paired)_contig_18, whole genome shotgun sequence (29112 bp)
Overview 1 RT 1: 927-6790 bp 2 RT 2: 12728-18485 bp Neighborhood of RT #1 [927, 6804] PRK13381 DcuC RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [12728, 18485] MFS_ShiA_like PHA02517 RVT-GII GIIM Feature: gene Location: 927-2183 bp Ori: OJR93054.1 Feature: domain Description: PRK13381 Location: 933-2148 bp Feature: domain Description: PRK1 3381 Location: 933-21 48 bp Feature: gene Location: 2180-3541 bp Ori: OJR93055.1 Feature: domain Description: DcuC Location: 2183-3515 bp Feature: domain Description: DcuC Location: 21 83-351 5 bp Feature: gene Location: 4187-4633 bp Ori: OJR93056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4493-4595 bp Feature: gene Location: 5166-6188 bp Ori: OJR93071.1 Feature: domain Description: Asparaginase_2 Location: 5247-6180 bp Feature: domain Description: Asparaginase_2 Location: 5247-61 80 bp Feature: gene Location: 6526-6804 bp Ori: OJR93057.1 Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: domain Description: DUF5339 Location: 6589-6790 bp Feature: gene Location: 12728-14122 bp Ori: OJR93060.1 Feature: domain Description: MFS_ShiA_like Location: 12824-14072 bp Feature: domain Description: MFS_ShiA_like Location: 1 2824-1 4072 bp Feature: gene Location: 15728-16216 bp Feature: domain Description: PHA02517 Location: 15731-16187 bp Feature: domain Description: PHA0251 7 Location: 1 5731 -1 61 87 bp Feature: gene Location: 16297-17805 bp Ori: OJR93061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16555-17287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6555-1 7287 bp Feature: domain Description: GIIM Note: maturase Location: 17362-17560 bp Feature: domain Description: GIIM Note: maturase Location: 1 7362-1 7560 bp Feature: gene Location: 17774-18199 bp Feature: gene Location: 18114-18485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13381 (peptidase T; Provisional), DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), MFS_ShiA_like (cd17369), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: MOKM01000558.1 Escherichia coli strain 687 BN4_687_1_(paired)_contig_559, whole genome shotgun sequence (759 bp)
Overview 1 RT 1: 9-711 bp Neighborhood of RT #1 [9, 759] RVT-GII Feature: gene Location: 9-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 73-711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOKM01000019.1 Escherichia coli strain 687 BN4_687_1_(paired)_contig_19, whole genome shotgun sequence (39752 bp)
Overview 1 RT 1: 29394-31512 bp Neighborhood of RT #1 [29394, 31514] IS285 group_II_RT_mat RVT-GII PHA02517 COG4930 Feature: gene Location: 29394-29876 bp Ori: OJR92926.1 Feature: domain Description: IS285 Location: 29424-29802 bp Feature: domain Description: IS285 Location: 29424-29802 bp Feature: gene Location: 30015-30255 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30027-30240 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 0027-3 0240 bp Feature: gene Location: 30224-30460 bp Ori: OJR92927.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30227-30410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0227-3 0410 bp Feature: gene Location: 30624-31181 bp Feature: domain Description: PHA02517 Location: 30630-31170 bp Feature: domain Description: PHA02517 Location: 3 063 0-3 1170 bp Feature: gene Location: 31290-31514 bp Ori: OJR92928.1 Feature: domain Description: COG4930 Location: 31293-31512 bp Feature: domain Description: COG493 0 Location: 3 1293 -3 1512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), COG4930 (Predicted ATP-dependent Lon-type protease )

Seq: MOKM01000006.1 Escherichia coli strain 687 BN4_687_1_(paired)_contig_6, whole genome shotgun sequence (118979 bp)
Overview 1 RT 1: 77819-83723 bp Neighborhood of RT #1 [77819, 83839] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 77819-78391 bp Ori: OJR95430.1 Feature: domain Description: Psu Location: 77837-78374 bp Feature: domain Description: Psu Location: 77837-78374 bp Feature: gene Location: 78694-79434 bp Feature: gene Location: 79431-81059 bp Ori: OJR95432.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79839-80268 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 79839-80268 bp Feature: gene Location: 81052-82236 bp Ori: OJR95433.1 Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: domain Description: PRK09692 Location: 81058-82213 bp Feature: gene Location: 82505-83839 bp Ori: OJR95470.1 Feature: domain Description: Phage_int_SAM_5 Location: 82874-83111 bp Feature: domain Description: Phage_int_SAM_5 Location: 82874 -83111 bp Feature: domain Description: INT_C_like_1 Location: 83207-83723 bp Feature: domain Description: INT_C_like_1 Location: 83207-83723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)