myRT

myRT report for GCA_001894545.1_ASM189454v1

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Seq: MOKP01000083.1 Escherichia coli strain 566 BN4_566_1_(paired)_contig_83, whole genome shotgun sequence (20551 bp)
Overview 1 RT 1: 8733-19641 bp Neighborhood of RT #1 [8733, 19655] PRK11447 RAYT RVT-GII GIIM PRK11114 bcsA Feature: gene Location: 8733-12206 bp Ori: OJR83774.1 Feature: domain Description: PRK11447 Location: 8736-12201 bp Feature: domain Description: PRK1 1 447 Location: 8736-1 2201 bp Feature: gene Location: 12553-13092 bp Ori: OJR83779.1 Feature: domain Description: RAYT Location: 12631-12994 bp Feature: domain Description: RAYT Location: 1 2631 -1 2994 bp Feature: gene Location: 13246-14592 bp Ori: OJR83775.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13534-14152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3534-1 41 52 bp Feature: domain Description: GIIM Note: maturase Location: 14200-14431 bp Feature: domain Description: GIIM Note: maturase Location: 1 4200-1 4431 bp Feature: gene Location: 15336-17486 bp Ori: OJR83776.1 Feature: domain Description: PRK11114 Location: 15396-17469 bp Feature: domain Description: PRK1 1 1 1 4 Location: 1 5396-1 7469 bp Feature: gene Location: 17550-19655 bp Ori: OJR83777.1 Feature: domain Description: bcsA Location: 17592-19641 bp Feature: domain Description: bcsA Location: 1 7592-1 9641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), RVT-GII, GIIM (pfam08388), PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), bcsA (PRK11498)

Seq: MOKP01000103.1 Escherichia coli strain 566 BN4_566_1_(paired)_contig_103, whole genome shotgun sequence (2251 bp)
Overview 1 RT 1: 92-2251 bp Neighborhood of RT #1 [92, 2251] RVT-GII GIIM Feature: gene Location: 92-1600 bp Ori: OJR83585.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: gene Location: 1569-1994 bp Feature: gene Location: 1909-2251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOKP01000239.1 Escherichia coli strain 566 BN4_566_1_(paired)_contig_239, whole genome shotgun sequence (1512 bp)
Overview 1 RT 1: 1-1513 bp Neighborhood of RT #1 [1, 1512] RVT-GII Feature: gene Location: 1-117 bp Feature: gene Location: 807-992 bp Feature: gene Location: 979-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093 -1513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOKP01000025.1 Escherichia coli strain 566 BN4_566_1_(paired)_contig_25, whole genome shotgun sequence (52262 bp)
Overview 1 RT 1: 446-7229 bp Neighborhood of RT #1 [446, 7231] Peptidase_S74 APC_N_CC Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 446-2575 bp Ori: OJR85910.1 Feature: domain Description: Peptidase_S74 Location: 2144-2291 bp Feature: domain Description: Peptidase_S74 Location: 214 4 -2291 bp Feature: domain Description: APC_N_CC Location: 2444-2567 bp Feature: domain Description: APC_N_CC Location: 24 4 4 -2567 bp Feature: gene Location: 2612-2758 bp Feature: domain Description: Caudo_TAP Location: 2618-2747 bp Feature: domain Description: Caudo_TAP Location: 2618-274 7 bp Feature: gene Location: 3203-4807 bp Ori: OJR85863.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3494-4085 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 94 -4 085 bp Feature: domain Description: TIR_2 Location: 4412-4700 bp Feature: domain Description: TIR_2 Location: 4 4 12-4 700 bp Feature: gene Location: 5165-5425 bp Ori: OJR85864.1 Feature: domain Description: PRK10597 Location: 5168-5408 bp Feature: domain Description: PRK10597 Location: 5168-54 08 bp Feature: gene Location: 5645-7231 bp Ori: OJR85865.1 Feature: domain Description: prfC Location: 5663-7229 bp Feature: domain Description: prfC Location: 5663-7229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)