myRT

myRT report for GCA_001894585.1_ASM189458v1

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Seq: MOKX01000091.1 Escherichia coli strain 724 BN4_724_1_(paired)_contig_91, whole genome shotgun sequence (7902 bp)
Overview 1 RT 1: 4350-7871 bp Neighborhood of RT #1 [4350, 7871] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 4350-4772 bp Ori: OJS18223.1 Feature: domain Description: DUF1380 Location: 4353-4647 bp Feature: domain Description: DUF1 380 Location: 4353-4647 bp Feature: gene Location: 4769-4960 bp Feature: gene Location: 5238-6905 bp Ori: OJS18225.1 Feature: domain Description: RVT_N Location: 5286-5523 bp Feature: domain Description: RVT_N Location: 5286-5523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574-6216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5574-621 6 bp Feature: domain Description: GIIM Note: maturase Location: 6267-6501 bp Feature: domain Description: GIIM Note: maturase Location: 6267-6501 bp Feature: domain Description: HNHc Note: nucleases Location: 6711-6870 bp Feature: domain Description: HNHc Note: nucleases Location: 671 1 -6870 bp Feature: gene Location: 7479-7871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MOKX01000017.1 Escherichia coli strain 724 BN4_724_1_(paired)_contig_17, whole genome shotgun sequence (231971 bp)
Overview 1 RT 1: 213867-219304 bp Neighborhood of RT #1 [213867, 219304] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 213867-215300 bp Ori: OJS21644.1 Feature: domain Description: DUF3987 Location: 213960-215037 bp Feature: domain Description: DUF3987 Location: 2 13960-2 15037 bp Feature: gene Location: 216158-216721 bp Ori: OJS21645.1 Feature: domain Description: Inovirus_Gp2 Location: 216215-216656 bp Feature: domain Description: Inovirus_Gp2 Location: 2 162 15-2 16656 bp Feature: gene Location: 217047-218210 bp Ori: OJS21646.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217161-217848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17161-2 17848 bp Feature: gene Location: 218197-218433 bp Feature: gene Location: 219071-219304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: MOKX01000038.1 Escherichia coli strain 724 BN4_724_1_(paired)_contig_38, whole genome shotgun sequence (14854 bp)
Overview 1 RT 1: 12068-14796 bp Neighborhood of RT #1 [12068, 14825] RVT-GII GIIM PHA02517 Feature: gene Location: 12068-12439 bp Feature: gene Location: 12354-12779 bp Feature: gene Location: 12748-14256 bp Ori: OJS19792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13006-13738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 006-13 73 8 bp Feature: domain Description: GIIM Note: maturase Location: 13813-14011 bp Feature: domain Description: GIIM Note: maturase Location: 13 813 -14011 bp Feature: gene Location: 14337-14825 bp Feature: domain Description: PHA02517 Location: 14340-14796 bp Feature: domain Description: PHA02517 Location: 143 40-14796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MOKX01000058.1 Escherichia coli strain 724 BN4_724_1_(paired)_contig_58, whole genome shotgun sequence (79470 bp)
Overview 1 RT 1: 58445-69385 bp Neighborhood of RT #1 [58445, 69385] Psu RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 58445-59017 bp Ori: OJS18826.1 Feature: domain Description: Psu Location: 58463-59000 bp Feature: domain Description: Psu Location: 584 63-59000 bp Feature: gene Location: 59320-60060 bp Feature: gene Location: 60057-61685 bp Ori: OJS18828.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 60465-60894 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 604 65-60894 bp Feature: gene Location: 61678-62862 bp Ori: OJS18829.1 Feature: domain Description: PRK09692 Location: 61684-62839 bp Feature: domain Description: PRK09692 Location: 61684 -62839 bp Feature: gene Location: 63571-64752 bp Ori: OJS18830.1 Feature: domain Description: DUF4062 Location: 63586-63913 bp Feature: domain Description: DUF4 062 Location: 63586-63913 bp Feature: gene Location: 64783-65244 bp Ori: OJS18831.1 Feature: domain Description: HTH_XRE Location: 64813-64981 bp Feature: domain Description: HTH_XRE Location: 64 813-64 981 bp Feature: gene Location: 65484-65981 bp Feature: gene Location: 66118-67824 bp Ori: OJS18832.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66268-66865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66268-66865 bp Feature: gene Location: 68093-68758 bp Ori: OJS18833.1 Feature: domain Description: Resolvase Location: 68114-68531 bp Feature: domain Description: Resolvase Location: 68114 -68531 bp Feature: gene Location: 69041-69385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)