myRT

myRT report for GCA_001894715.1_ASM189471v1

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Seq: MOLE01000092.1 Escherichia coli strain 723 BN4_723_1_(paired)_contig_92, whole genome shotgun sequence (2052 bp)
Overview 1 RT 1: 1-1826 bp Neighborhood of RT #1 [1, 1826] RVT-GII Feature: gene Location: 1-1146 bp Ori: OJS53650.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: gene Location: 1115-1540 bp Feature: gene Location: 1455-1826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOLE01000008.1 Escherichia coli strain 723 BN4_723_1_(paired)_contig_8, whole genome shotgun sequence (21676 bp)
Overview 1 RT 1: 3972-9409 bp Neighborhood of RT #1 [3972, 9409] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 3972-5405 bp Ori: OJS60253.1 Feature: domain Description: DUF3987 Location: 4065-5142 bp Feature: domain Description: DUF3987 Location: 4065-5142 bp Feature: gene Location: 6263-6826 bp Ori: OJS60254.1 Feature: domain Description: Inovirus_Gp2 Location: 6320-6761 bp Feature: domain Description: Inovirus_Gp2 Location: 632 0-6761 bp Feature: gene Location: 7152-8315 bp Ori: OJS60255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7266-7953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 66-7953 bp Feature: gene Location: 8302-8538 bp Feature: gene Location: 9176-9409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: MOLE01000044.1 Escherichia coli strain 723 BN4_723_1_(paired)_contig_44, whole genome shotgun sequence (4194 bp)
Overview 1 RT 1: 408-3259 bp Neighborhood of RT #1 [408, 3264] PRK13877 YjbI RVT-Retrons CspC Feature: gene Location: 408-755 bp Ori: OJS54751.1 Feature: domain Description: PRK13877 Location: 456-693 bp Feature: domain Description: PRK13 877 Location: 456-693 bp Feature: gene Location: 1005-1343 bp Ori: OJS54752.1 Feature: domain Description: YjbI Location: 1047-1269 bp Feature: domain Description: YjbI Location: 1047-1269 bp Feature: gene Location: 1917-3056 bp Ori: OJS54753.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2061-2616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2061-2616 bp Feature: gene Location: 3061-3264 bp Ori: OJS54754.1 Feature: domain Description: CspC Location: 3064-3259 bp Feature: domain Description: CspC Location: 3 064-3 259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13877 (conjugal transfer transcriptional regulator TraJ), YjbI (COG2346), RVT-Retrons, CspC (COG1278)

Seq: MOLE01000003.1 Escherichia coli strain 723 BN4_723_1_(paired)_contig_3, whole genome shotgun sequence (112488 bp)
Overview 1 RT 1: 43105-54027 bp Neighborhood of RT #1 [43105, 54044] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43105-43449 bp Feature: gene Location: 43732-44397 bp Ori: OJS61455.1 Feature: domain Description: Resolvase Location: 43753-44170 bp Feature: domain Description: Resolvase Location: 4 3753-4 4 170 bp Feature: gene Location: 44665-46371 bp Ori: OJS61456.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44815-45412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 4 815-4 54 12 bp Feature: gene Location: 46508-47005 bp Feature: gene Location: 47245-47706 bp Ori: OJS61457.1 Feature: domain Description: HTH_XRE Location: 47275-47443 bp Feature: domain Description: HTH_XRE Location: 4 7275-4 74 4 3 bp Feature: gene Location: 47737-48918 bp Ori: OJS61458.1 Feature: domain Description: DUF4062 Location: 47752-48079 bp Feature: domain Description: DUF4 062 Location: 4 7752-4 8079 bp Feature: gene Location: 49627-50811 bp Ori: OJS61459.1 Feature: domain Description: PRK09692 Location: 49633-50788 bp Feature: domain Description: PRK09692 Location: 4 9633-50788 bp Feature: gene Location: 50804-52432 bp Ori: OJS61460.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51212-51641 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51212-5164 1 bp Feature: gene Location: 52429-53169 bp Feature: gene Location: 53472-54044 bp Ori: OJS61462.1 Feature: domain Description: Psu Location: 53490-54027 bp Feature: domain Description: Psu Location: 534 90-54 027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)