myRT

myRT report for GCA_001895205.1_ASM189520v1

Download annotations/find similar RTs

Seq: BDJF01000004.1 Vibrio sp. M12-1144 DNA, contig: scaffold15, whole genome shotgun sequence (7107 bp)
Overview 1 RT 1: 731-5284 bp Neighborhood of RT #1 [731, 5284] RVT-UG11 RVT-UG11 ParD_antitoxin Feature: gene Location: 731-1309 bp Feature: gene Location: 2034-2195 bp Feature: gene Location: 2186-2425 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2318-2417 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 231 8-241 7 bp Feature: gene Location: 2554-2955 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2560-2767 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2560-2767 bp Feature: gene Location: 3165-3407 bp Feature: domain Description: ParD_antitoxin Location: 3168-3402 bp Feature: domain Description: ParD_antitoxin Location: 31 68-3402 bp Feature: gene Location: 5093-5284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, ParD_antitoxin (pfam03693)

Seq: BDJF01000006.1 Vibrio sp. M12-1144 DNA, contig: scaffold1, whole genome shotgun sequence (581069 bp)
Overview 1 RT 1: 407311-415573 bp Neighborhood of RT #1 [407311, 415593] RAMP_I_III RAMP_I_III cas7_csf2 TIGR03986 RVT-CRISPR Cas_Cas1 Cas2_I_II_III DUF5051 Feature: gene Location: 407311-408810 bp Feature: domain Description: RAMP_I_III Location: 407362-407866 bp Feature: domain Description: RAMP_I_III Location: 407362 -407866 bp Feature: domain Description: RAMP_I_III Location: 408055-408388 bp Feature: domain Description: RAMP_I_III Location: 408055-408388 bp Feature: domain Description: cas7_csf2 Location: 408493-408637 bp Feature: domain Description: cas7_csf2 Location: 408493-408637 bp Feature: gene Location: 408810-411206 bp Feature: domain Description: TIGR03986 Location: 408831-410796 bp Feature: domain Description: TIGR03986 Location: 408831-410796 bp Feature: gene Location: 411215-413917 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 412307-412904 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 412 307-412 904 bp Feature: domain Description: Cas_Cas1 Location: 412976-413792 bp Feature: domain Description: Cas_Cas1 Location: 412 976-413792 bp Feature: gene Location: 413921-414199 bp Feature: domain Description: Cas2_I_II_III Location: 413933-414128 bp Feature: domain Description: Cas2 _I_II_III Location: 413933-41412 8 bp Feature: gene Location: 415042-415593 bp Feature: domain Description: DUF5051 Location: 415045-415573 bp Feature: domain Description: DUF5051 Location: 415045-415573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAMP_I_III (cl21471), cas7_csf2 (TIGR03115), TIGR03986 (CRISPR-associated protein), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), DUF5051 (pfam16473)

Seq: BDJF01000025.1 Vibrio sp. M12-1144 DNA, contig: scaffold42, whole genome shotgun sequence (284813 bp)
Overview 1 RT 1: 209716-213813 bp Neighborhood of RT #1 [209716, 213818] Avd_like RVT-DGRs aspA DcuA Feature: gene Location: 209716-210048 bp Feature: domain Description: Avd_like Location: 209734-210040 bp Feature: domain Description: Avd_like Location: 20973 4-210040 bp Feature: gene Location: 210064-210279 bp Feature: gene Location: 210344-211396 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 210554-211160 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 210554-211160 bp Feature: gene Location: 211455-212285 bp Feature: domain Description: aspA Location: 211458-212280 bp Feature: domain Description: aspA Location: 211458-212280 bp Feature: gene Location: 212505-213818 bp Feature: domain Description: DcuA Location: 212508-213813 bp Feature: domain Description: DcuA Location: 212508-213 813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, aspA (TIGR00839), DcuA (COG2704)