myRT

myRT report for GCA_001895925.1_ASM189592v1

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Seq: MPPI01000099.1 Phormidesmis priestleyi ULC007 A3_105_len_1684, whole genome shotgun sequence (1684 bp)
Overview 1 RT 1: 174-1633 bp Neighborhood of RT #1 [174, 1683] RVT_N RVT-GII Feature: gene Location: 174-518 bp Feature: gene Location: 823-1683 bp Feature: domain Description: RVT_N Location: 904-1144 bp Feature: domain Description: RVT_N Location: 904-1 1 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1201-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 201 -1 633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: MPPI01000004.1 Phormidesmis priestleyi ULC007 A3_3_len_S_2_212364, whole genome shotgun sequence (212364 bp)
Overview 1 RT 1: 126434-130178 bp Neighborhood of RT #1 [126434, 130327] PRK09907 RVT-UG12 PhoH YlqC Feature: gene Location: 126434-126763 bp Feature: domain Description: PRK09907 Location: 126440-126761 bp Feature: domain Description: PRK09907 Location: 12 6440-12 6761 bp Feature: gene Location: 126892-127032 bp Feature: gene Location: 127059-128636 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 127404-127857 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12 7404-12 7857 bp Feature: gene Location: 128801-129754 bp Feature: domain Description: PhoH Location: 128813-129749 bp Feature: domain Description: PhoH Location: 12 8813-12 9749 bp Feature: gene Location: 129941-130327 bp Feature: domain Description: YlqC Location: 129974-130178 bp Feature: domain Description: YlqC Location: 12 9974-130178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09907 (endoribonuclease MazF), RVT-UG12, PhoH (pfam02562), YlqC (COG1837)

Seq: MPPI01000047.1 Phormidesmis priestleyi ULC007 A3_46_len_35326, whole genome shotgun sequence (35326 bp)
Overview 1 RT 1: 927-3893 bp Neighborhood of RT #1 [927, 3893] TPR RVT-GII GIIM RVT-GII Feature: gene Location: 927-1496 bp Feature: gene Location: 1493-1882 bp Feature: domain Description: TPR Location: 1532-1838 bp Feature: domain Description: TPR Location: 153 2-183 8 bp Feature: gene Location: 2002-2544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2011-2107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2011-2107 bp Feature: domain Description: GIIM Note: maturase Location: 2149-2356 bp Feature: domain Description: GIIM Note: maturase Location: 2149-23 56 bp Feature: gene Location: 2617-3336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2893-3331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2893 -3 3 3 1 bp Feature: gene Location: 3357-3548 bp Feature: gene Location: 3612-3893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII, GIIM (pfam08388)

Seq: MPPI01000063.1 Phormidesmis priestleyi ULC007 A3_65_len_20283, whole genome shotgun sequence (20283 bp)
Overview 1 RT 1: 12226-18273 bp Neighborhood of RT #1 [12226, 18293] COG1483 RVT_N RVT-GII eMpr Feature: gene Location: 12226-15123 bp Feature: domain Description: COG1483 Location: 12274-13777 bp Feature: domain Description: COG14 83 Location: 12274 -13777 bp Feature: gene Location: 15465-15605 bp Feature: gene Location: 15829-16518 bp Feature: domain Description: RVT_N Location: 15982-16225 bp Feature: domain Description: RVT_N Location: 15982-16225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16276-16459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16276-164 59 bp Feature: gene Location: 16705-17139 bp Feature: gene Location: 17355-18293 bp Feature: domain Description: eMpr Location: 17619-18273 bp Feature: domain Description: eMpr Location: 17619-18273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1483 (Predicted ATPase, AAA+ superfamily ), RVT_N (pfam13655), RVT-GII, eMpr (COG3591)

Seq: MPPI01000070.1 Phormidesmis priestleyi ULC007 A3_74_len_10925, whole genome shotgun sequence (10925 bp)
Overview 1 RT 1: 1795-7182 bp Neighborhood of RT #1 [1795, 7208] HsdM HsdM YhcG_C RVT-GII Intron_maturas2 HNHc DUF1016_N Spo0J Feature: gene Location: 1795-2613 bp Feature: domain Description: HsdM Location: 1810-1930 bp Feature: domain Description: HsdM Location: 1810-1930 bp Feature: domain Description: HsdM Location: 2065-2374 bp Feature: domain Description: HsdM Location: 2065 -2374 bp Feature: gene Location: 2669-3151 bp Feature: domain Description: YhcG_C Location: 2675-3092 bp Feature: domain Description: YhcG_C Location: 2675 -3092 bp Feature: gene Location: 3242-5044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3503-4298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 03-4298 bp Feature: domain Description: Intron_maturas2 Location: 4400-4643 bp Feature: domain Description: Intron_maturas2 Location: 4400-4643 bp Feature: domain Description: HNHc Note: nucleases Location: 4808-4982 bp Feature: domain Description: HNHc Note: nucleases Location: 4808-4982 bp Feature: gene Location: 5531-6157 bp Feature: domain Description: DUF1016_N Location: 5579-5987 bp Feature: domain Description: DUF1016_N Location: 5 5 79-5 987 bp Feature: gene Location: 6300-7208 bp Feature: domain Description: Spo0J Location: 6384-7182 bp Feature: domain Description: Spo0J Location: 6384-7182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), YhcG_C, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1016_N (pfam17761), Spo0J (COG1475)

Seq: MPPI01000080.1 Phormidesmis priestleyi ULC007 A3_85_len_4446, whole genome shotgun sequence (4446 bp)
Overview 1 RT 1: 1-1990 bp Neighborhood of RT #1 [1, 1990] rve_3 RVT-GII GIIM Feature: gene Location: 1-156 bp Feature: domain Description: rve_3 Location: 10-115 bp Feature: domain Description: rve_3 Location: 10-115 bp Feature: gene Location: 244-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 5-56 8 bp Feature: domain Description: GIIM Note: maturase Location: 649-853 bp Feature: domain Description: GIIM Note: maturase Location: 6 49-853 bp Feature: gene Location: 1260-1499 bp Feature: gene Location: 1736-1990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)

Seq: MPPI01000087.1 Phormidesmis priestleyi ULC007 A3_92_len_2542, whole genome shotgun sequence (2542 bp)
Overview 1 RT 1: 1-1828 bp Neighborhood of RT #1 [1, 1857] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 1-222 bp Feature: gene Location: 346-1857 bp Feature: domain Description: RVT_N Location: 382-628 bp Feature: domain Description: RVT_N Location: 382-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67 9-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-127 3 bp Feature: domain Description: McrA Location: 1504-1828 bp Feature: domain Description: McrA Location: 1504-1828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: MPPI01000092.1 Phormidesmis priestleyi ULC007 A3_97_len_2250, whole genome shotgun sequence (2250 bp)
Overview 1 RT 1: 489-2148 bp Neighborhood of RT #1 [489, 2153] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 489-2153 bp Feature: domain Description: RVT_N Location: 534-774 bp Feature: domain Description: RVT_N Location: 534-774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 28 -1473 bp Feature: domain Description: GIIM Note: maturase Location: 1545-1779 bp Feature: domain Description: GIIM Note: maturase Location: 1545-1779 bp Feature: domain Description: HNHc Note: nucleases Location: 2004-2148 bp Feature: domain Description: HNHc Note: nucleases Location: 2004-2148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MPPI01000029.1 Phormidesmis priestleyi ULC007 LA_67_len_57342, whole genome shotgun sequence (57342 bp)
Overview 1 RT 1: 201-5984 bp Neighborhood of RT #1 [201, 5995] RHS_repeat RHS_repeat RhsA SUKH_6 RVT_N RVT-GII RVT-GII GIIM McrA YadD Feature: gene Location: 201-2078 bp Feature: domain Description: RHS_repeat Location: 264-378 bp Feature: domain Description: RHS_repeat Location: 264-378 bp Feature: domain Description: RHS_repeat Location: 417-525 bp Feature: domain Description: RHS_repeat Location: 417-525 bp Feature: domain Description: RhsA Location: 645-1785 bp Feature: domain Description: RhsA Location: 645-1785 bp Feature: gene Location: 2087-2665 bp Feature: domain Description: SUKH_6 Location: 2168-2465 bp Feature: domain Description: SUKH_6 Location: 2168-2465 bp Feature: gene Location: 3041-4552 bp Feature: domain Description: RVT_N Location: 3077-3317 bp Feature: domain Description: RVT_N Location: 3077-3317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374-3800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3374-3800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3800-3968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3800-39 68 bp Feature: domain Description: GIIM Note: maturase Location: 4025-4145 bp Feature: domain Description: GIIM Note: maturase Location: 4025-4145 bp Feature: domain Description: McrA Location: 4214-4523 bp Feature: domain Description: McrA Location: 4214-4523 bp Feature: gene Location: 4703-4984 bp Feature: gene Location: 5372-5995 bp Feature: domain Description: YadD Location: 5378-5984 bp Feature: domain Description: YadD Location: 5378-59 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHS_repeat (pfam05593), RhsA (COG3209), SUKH_6 (pfam14568), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YadD (COG5464)