myRT

myRT report for GCA_001896145.1_ASM189614v1

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Seq: MPOI01000002.1 Archangium sp. Cb G35 Contig_3, whole genome shotgun sequence (993275 bp)
Overview 1 RT 1: 136724-144261 bp Neighborhood of RT #1 [136724, 145685] Tox-REase-5 Imm52 RVT-Retrons COG1878 CHD TOMM_kin_cyc Feature: gene Location: 136724-138055 bp Feature: domain Description: Tox-REase-5 Location: 137723-137984 bp Feature: domain Description: Tox-REase-5 Location: 1 37723-1 37984 bp Feature: gene Location: 138052-138783 bp Feature: domain Description: Imm52 Location: 138463-138757 bp Feature: domain Description: Imm52 Location: 1 38463-1 38757 bp Feature: gene Location: 139234-140658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 139792-140419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 39792-1 4041 9 bp Feature: gene Location: 140662-141318 bp Feature: domain Description: COG1878 Location: 140683-141298 bp Feature: domain Description: COG1 878 Location: 1 40683-1 41 298 bp Feature: gene Location: 141588-145685 bp Feature: domain Description: CHD Location: 141708-142200 bp Feature: domain Description: CHD Location: 1 41 708-1 42200 bp Feature: domain Description: TOMM_kin_cyc Location: 142452-144261 bp Feature: domain Description: TOMM_kin_cyc Location: 1 42452-1 44261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tox-REase-5 (pfam15648), Imm52 (pfam15579), RVT-Retrons, COG1878 (Kynurenine formamidase ), CHD (cd07302), TOMM_kin_cyc (TIGR03903)

Seq: MPOI01000012.1 Archangium sp. Cb G35 Contig_30, whole genome shotgun sequence (505674 bp)
Overview 1 RT 1: 249263-255257 bp Neighborhood of RT #1 [249263, 255257] SUKH_6 SUKH_6 RVT-Retrons SWIM Feature: gene Location: 249263-249700 bp Feature: domain Description: SUKH_6 Location: 249326-249680 bp Feature: domain Description: SUKH_6 Location: 2 4932 6-2 49680 bp Feature: gene Location: 249772-250227 bp Feature: domain Description: SUKH_6 Location: 249835-250192 bp Feature: domain Description: SUKH_6 Location: 2 49835-2 50192 bp Feature: gene Location: 250277-251542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 250727-251339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5072 7-2 51339 bp Feature: gene Location: 251755-253368 bp Feature: domain Description: SWIM Location: 253117-253231 bp Feature: domain Description: SWIM Location: 2 53117-2 532 31 bp Feature: gene Location: 253365-255257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUKH_6 (pfam14568), RVT-Retrons, SWIM (pfam04434)

Seq: MPOI01000006.1 Archangium sp. Cb G35 Contig_85, whole genome shotgun sequence (635558 bp)
Overview 1 RT 1: 23766-32413 bp Neighborhood of RT #1 [23766, 36138] ATZ_TRZ_like Atl1 RVT-Retrons retinol-DH_like_SDR_c_like Beta_helix Beta_helix Beta_helix Beta_helix Beta_helix Feature: gene Location: 23766-25127 bp Feature: domain Description: ATZ_TRZ_like Location: 23784-25011 bp Feature: domain Description: ATZ_TRZ_like Location: 23 784-25011 bp Feature: gene Location: 25242-25661 bp Feature: domain Description: Atl1 Location: 25272-25560 bp Feature: domain Description: Atl1 Location: 25272-25560 bp Feature: gene Location: 25788-27206 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26385-26979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 263 85-26979 bp Feature: gene Location: 27509-28324 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 27521-28280 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 27521-28280 bp Feature: gene Location: 28432-36138 bp Feature: domain Description: Beta_helix Location: 28705-29101 bp Feature: domain Description: Beta_helix Location: 28705-29101 bp Feature: domain Description: Beta_helix Location: 29524-29926 bp Feature: domain Description: Beta_helix Location: 29524-29926 bp Feature: domain Description: Beta_helix Location: 30352-30754 bp Feature: domain Description: Beta_helix Location: 3 03 52-3 0754 bp Feature: domain Description: Beta_helix Location: 31180-31582 bp Feature: domain Description: Beta_helix Location: 3 1180-3 1582 bp Feature: domain Description: Beta_helix Location: 32044-32413 bp Feature: domain Description: Beta_helix Location: 3 2044-3 2413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATZ_TRZ_like (cd01298), Atl1 (COG3695), RVT-Retrons, retinol-DH_like_SDR_c_like (cd05327), Beta_helix (pfam13229)

Seq: MPOI01000001.1 Archangium sp. Cb G35 Contig_95, whole genome shotgun sequence (1567116 bp)
Overview 1 RT 1: 345190-353139 bp 2 RT 2: 918097-923113 bp Neighborhood of RT #1 [345190, 353291] WGR_DNA_ligase HEAT_2 SWIM RVT-Retrons ADP_ribosyl_GH Neighborhood of RT #2 [918097, 923178] TnpB_IS66 HTH_Tnp_1 RVT-GII ftsA FtsQ Feature: gene Location: 345190-348267 bp Feature: domain Description: WGR_DNA_ligase Location: 345208-345424 bp Feature: domain Description: WGR_DNA_ligase Location: 34 5208-34 54 24 bp Feature: domain Description: HEAT_2 Location: 345619-345823 bp Feature: domain Description: HEAT_2 Location: 34 5619-34 5823 bp Feature: gene Location: 348257-349900 bp Feature: domain Description: SWIM Location: 349787-349868 bp Feature: domain Description: SWIM Location: 34 9787-34 9868 bp Feature: gene Location: 350180-351781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 350732-351347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 350732-35134 7 bp Feature: gene Location: 351836-352072 bp Feature: gene Location: 352170-353291 bp Feature: domain Description: ADP_ribosyl_GH Location: 352191-353139 bp Feature: domain Description: ADP_ribosyl_GH Location: 352191-353139 bp Feature: gene Location: 918097-918495 bp Feature: domain Description: TnpB_IS66 Location: 918127-918412 bp Feature: domain Description: TnpB_IS66 Location: 918127-9184 12 bp Feature: gene Location: 918492-918908 bp Feature: domain Description: HTH_Tnp_1 Location: 918600-918813 bp Feature: domain Description: HTH_Tnp_1 Location: 918600-918813 bp Feature: gene Location: 919078-920340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919303-919987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919303-919987 bp Feature: gene Location: 921050-922282 bp Feature: domain Description: ftsA Location: 921077-922181 bp Feature: domain Description: ftsA Location: 921077-922181 bp Feature: gene Location: 922327-923178 bp Feature: domain Description: FtsQ Location: 922426-923113 bp Feature: domain Description: FtsQ Location: 9224 26-923113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), SWIM (pfam04434), RVT-Retrons, ADP_ribosyl_GH (pfam03747), TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), RVT-GII, ftsA (TIGR01174), FtsQ (pfam03799)