myRT

myRT report for GCA_001896155.1_ASM189615v1

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Seq: MPOR01000079.1 Pseudomonas sp. FSL W5-0203 NODE_79_length_6219_cov_0.253553_ID_14916, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 223-5008 bp Neighborhood of RT #1 [223, 5043] L1-EN RVT-UNC DUF1725 Tnp_22_trimer Feature: gene Location: 223-4050 bp Ori: OJT19415.1 Feature: domain Description: L1-EN Location: 253-934 bp Feature: domain Description: L1 -EN Location: 253-934 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1807-2464 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 807-2464 bp Feature: domain Description: DUF1725 Location: 3949-4003 bp Feature: domain Description: DUF1 725 Location: 3949-4003 bp Feature: gene Location: 4639-5043 bp Feature: domain Description: Tnp_22_trimer Location: 4885-5008 bp Feature: domain Description: Tnp_22_trimer Location: 4885-5008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333), Tnp_22_trimer (pfam17489)

Seq: MPOR01000047.1 Pseudomonas sp. FSL W5-0203 NODE_47_length_37357_cov_3.02145_ID_14874, whole genome shotgun sequence (37357 bp)
Overview 1 RT 1: 62-4297 bp Neighborhood of RT #1 [62, 4446] AAA_21 AAA_21 RVT-Retrons Arc Feature: gene Location: 62-1177 bp Ori: OJT24688.1 Feature: domain Description: AAA_21 Location: 143-248 bp Feature: domain Description: AAA_2 1 Location: 143-2 48 bp Feature: domain Description: AAA_21 Location: 524-806 bp Feature: domain Description: AAA_2 1 Location: 52 4-806 bp Feature: gene Location: 1177-2133 bp Ori: OJT24689.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1279-1846 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 79-1846 bp Feature: gene Location: 3307-3534 bp Feature: gene Location: 4120-4446 bp Ori: OJT24690.1 Feature: domain Description: Arc Location: 4153-4297 bp Feature: domain Description: Arc Location: 4153-42 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, Arc (pfam03869)

Seq: MPOR01000032.1 Pseudomonas sp. FSL W5-0203 NODE_32_length_59953_cov_4.02423_ID_14850, whole genome shotgun sequence (59953 bp)
Overview 1 RT 1: 27397-36312 bp Neighborhood of RT #1 [27397, 36341] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 27397-28695 bp Ori: OJT28067.1 Feature: domain Description: PRK10770 Location: 27439-28645 bp Feature: domain Description: PRK10770 Location: 2743 9-28645 bp Feature: gene Location: 28712-31489 bp Ori: OJT28068.1 Feature: domain Description: LptD Location: 29051-31472 bp Feature: domain Description: LptD Location: 29051-3 1472 bp Feature: gene Location: 31641-33341 bp Ori: OJT28069.1 Feature: domain Description: RVT_N Location: 31698-31941 bp Feature: domain Description: RVT_N Location: 3 1698-3 1941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31986-32622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1986-3 2622 bp Feature: domain Description: GIIM Note: maturase Location: 32673-32907 bp Feature: domain Description: GIIM Note: maturase Location: 3 2673 -3 2907 bp Feature: domain Description: HNH Note: nucleases Location: 33159-33297 bp Feature: domain Description: HNH Note: nucleases Location: 3 3 159-3 3 297 bp Feature: gene Location: 34645-35670 bp Ori: OJT28070.1 Feature: domain Description: COG3178 Location: 34663-35662 bp Feature: domain Description: COG3 178 Location: 3 4663 -3 5662 bp Feature: gene Location: 35667-36341 bp Ori: OJT28071.1 Feature: domain Description: NTP_transferase_like_1 Location: 35673-36312 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 5673 -3 63 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)