myRT

myRT report for GCA_001897595.1_ASM189759v1

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Seq: MKTE01000049.1 Bacteroidia bacterium 44-10 SCNpilot_bf_inoc_scaffold_2792, whole genome shotgun sequence (13334 bp)
Overview 1 RT 1: 10321-12805 bp Neighborhood of RT #1 [10321, 12915] DUF3192 RVT-GII GIIM Feature: gene Location: 10321-10782 bp Feature: gene Location: 11114-11356 bp Feature: domain Description: DUF3192 Location: 11126-11312 bp Feature: domain Description: DUF31 92 Location: 1 1 1 26-1 1 31 2 bp Feature: gene Location: 11659-12915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11863-12520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 863-1 2520 bp Feature: domain Description: GIIM Note: maturase Location: 12601-12805 bp Feature: domain Description: GIIM Note: maturase Location: 1 2601 -1 2805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3192 (pfam11399), RVT-GII, GIIM (pfam08388)

Seq: MKTE01000079.1 Bacteroidia bacterium 44-10 SCNpilot_bf_inoc_scaffold_4869, whole genome shotgun sequence (4410 bp)
Overview 1 RT 1: 1-4146 bp Neighborhood of RT #1 [1, 4286] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 1-524 bp Feature: gene Location: 1010-2416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349-1967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1349-1967 bp Feature: domain Description: GIIM Note: maturase Location: 2027-2255 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 7-2 2 55 bp Feature: gene Location: 2994-4286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3204-3861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 04-3861 bp Feature: domain Description: GIIM Note: maturase Location: 3939-4146 bp Feature: domain Description: GIIM Note: maturase Location: 3939-4146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MKTE01000013.1 Bacteroidia bacterium 44-10 SCNpilot_bf_inoc_scaffold_11760, whole genome shotgun sequence (2942 bp)
Overview 1 RT 1: 1-2724 bp Neighborhood of RT #1 [1, 2915] DDE_5 RVT-GII GIIM Feature: gene Location: 1-499 bp Feature: domain Description: DDE_5 Location: 265-424 bp Feature: domain Description: DDE_5 Location: 265-424 bp Feature: gene Location: 964-1143 bp Feature: gene Location: 1503-2915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1848-2466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1848-2466 bp Feature: domain Description: GIIM Note: maturase Location: 2517-2724 bp Feature: domain Description: GIIM Note: maturase Location: 2517-2724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388)

Seq: MKTE01000042.1 Bacteroidia bacterium 44-10 SCNpilot_bf_inoc_scaffold_255, whole genome shotgun sequence (411510 bp)
Overview 1 RT 1: 8132-11871 bp Neighborhood of RT #1 [8132, 11871] KOG0730 NERD RVT-Retrons HTH_XRE Feature: gene Location: 8132-9157 bp Feature: domain Description: KOG0730 Location: 8297-8951 bp Feature: domain Description: KOG0730 Location: 8297-8951 bp Feature: gene Location: 9279-10442 bp Feature: domain Description: NERD Location: 9378-9546 bp Feature: domain Description: NERD Location: 9378-954 6 bp Feature: gene Location: 10447-11301 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10618-11134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10618-11134 bp Feature: gene Location: 11276-11572 bp Feature: domain Description: HTH_XRE Location: 11288-11450 bp Feature: domain Description: HTH_XRE Location: 11288-114 50 bp Feature: gene Location: 11653-11871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), KOG0730 (KOG0730, AAA+-type ATPase ), NERD (pfam08378)