myRT

myRT report for GCA_001898165.1_ASM189816v1

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Seq: MKTD01000079.1 Bacteroidia bacterium 43-41 SCNpilot_bf_inoc_scaffold_760, whole genome shotgun sequence (24811 bp)
Overview 1 RT 1: 6850-11459 bp Neighborhood of RT #1 [6850, 11459] ICE_VC0181 Riboflavin_deaminase-reductase COG2865 RVT-UG2 Feature: gene Location: 6850-7305 bp Ori: OJV32210.1 Feature: domain Description: ICE_VC0181 Location: 6898-7276 bp Feature: domain Description: ICE_VC01 81 Location: 6898-7276 bp Feature: gene Location: 7700-9202 bp Ori: OJV32199.1 Feature: domain Description: Riboflavin_deaminase-reductase Location: 7781-8108 bp Feature: domain Description: Riboflavin_deaminase-reductase Location: 7781 -81 08 bp Feature: domain Description: COG2865 Location: 8150-9182 bp Feature: domain Description: COG2865 Location: 81 50-91 82 bp Feature: gene Location: 9342-10889 bp Ori: OJV32200.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9582-10530 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9582-1 0530 bp Feature: gene Location: 10912-11115 bp Feature: gene Location: 11277-11459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ICE_VC0181 (TIGR02256), Riboflavin_deaminase-reductase (cd01284), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG2

Seq: MKTD01000025.1 Bacteroidia bacterium 43-41 SCNpilot_bf_inoc_scaffold_2190, whole genome shotgun sequence (8906 bp)
Overview 1 RT 1: 3448-8809 bp Neighborhood of RT #1 [3448, 8809] DUF2200 OMP_RagA_SusC OMP_b-brl_3 RVT_N RVT-GII GIIM Feature: gene Location: 3448-3810 bp Ori: OJV37547.1 Feature: domain Description: DUF2200 Location: 3481-3805 bp Feature: domain Description: DUF2 2 00 Location: 3481-3805 bp Feature: gene Location: 3941-6142 bp Ori: OJV37545.1 Feature: domain Description: OMP_RagA_SusC Location: 3995-4256 bp Feature: domain Description: OMP_RagA_SusC Location: 3995-42 56 bp Feature: domain Description: OMP_b-brl_3 Location: 4958-6074 bp Feature: domain Description: OMP_b-brl_3 Location: 4958-6074 bp Feature: gene Location: 6768-8267 bp Ori: OJV37548.1 Feature: domain Description: RVT_N Location: 6837-7080 bp Feature: domain Description: RVT_N Location: 6837-7080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7125-7773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712 5-7773 bp Feature: domain Description: GIIM Note: maturase Location: 7827-8058 bp Feature: domain Description: GIIM Note: maturase Location: 782 7-8058 bp Feature: gene Location: 8489-8809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2200 (pfam09966), OMP_RagA_SusC (TIGR04056), OMP_b-brl_3 (pfam14905), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MKTD01000020.1 Bacteroidia bacterium 43-41 SCNpilot_bf_inoc_scaffold_1671, whole genome shotgun sequence (11449 bp)
Overview 1 RT 1: 2395-7727 bp Neighborhood of RT #1 [2395, 7727] tcm_partner INTN1_C_like RVT-Retrons Feature: gene Location: 2395-3537 bp Ori: OJV37691.1 Feature: domain Description: tcm_partner Location: 2434-3214 bp Feature: domain Description: tcm_partner Location: 243 4-3 214 bp Feature: gene Location: 3701-4144 bp Ori: OJV37692.1 Feature: domain Description: INTN1_C_like Location: 3755-4139 bp Feature: domain Description: INTN1_C_like Location: 3 755-413 9 bp Feature: gene Location: 4309-5349 bp Ori: OJV37693.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4531-5095 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 453 1-5095 bp Feature: gene Location: 5494-6756 bp Feature: gene Location: 7098-7727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tcm_partner (TIGR04474), INTN1_C_like (cd01185), RVT-Retrons