myRT

myRT report for GCA_001898405.1_ASM189840v1

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Seq: MKTW01000016.1 Sphingobacteriales bacterium 44-61 SCNpilot_expt_1000_bf_scaffold_77, whole genome shotgun sequence (207868 bp)
Overview 1 RT 1: 150527-158465 bp 2 RT 2: 178875-186665 bp Neighborhood of RT #1 [150527, 158465] OMP_RagA_SusC SusD RVT-GII GIIM TlpA_like_family Neighborhood of RT #2 [178875, 187720] DUF4134 RVT-GII GIIM DUF1896 COG4646 HELICc Feature: gene Location: 150527-153457 bp Feature: domain Description: OMP_RagA_SusC Location: 150536-153452 bp Feature: domain Description: OMP_RagA_SusC Location: 1 50536-1 53452 bp Feature: gene Location: 153475-154863 bp Feature: domain Description: SusD Location: 153685-154741 bp Feature: domain Description: SusD Location: 1 53685-1 54741 bp Feature: gene Location: 155427-156677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155631-156288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55631 -1 56288 bp Feature: domain Description: GIIM Note: maturase Location: 156372-156570 bp Feature: domain Description: GIIM Note: maturase Location: 1 56372-1 56570 bp Feature: gene Location: 156786-158087 bp Feature: domain Description: TlpA_like_family Location: 156909-157236 bp Feature: domain Description: TlpA_like_family Location: 1 56909-1 57236 bp Feature: gene Location: 158127-158465 bp Feature: gene Location: 178875-179279 bp Feature: gene Location: 179544-179711 bp Feature: domain Description: DUF4134 Location: 179553-179712 bp Feature: domain Description: DUF41 34 Location: 1 79553-1 7971 2 bp Feature: gene Location: 180263-181540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180467-181124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 80467-1 81 1 24 bp Feature: domain Description: GIIM Note: maturase Location: 181211-181421 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 21 1 -1 81 421 bp Feature: gene Location: 181748-182179 bp Feature: domain Description: DUF1896 Location: 181895-182111 bp Feature: domain Description: DUF1 896 Location: 1 81 895-1 821 1 1 bp Feature: gene Location: 182219-187720 bp Feature: domain Description: COG4646 Location: 184280-186245 bp Feature: domain Description: COG4646 Location: 1 84280-1 86245 bp Feature: domain Description: HELICc Location: 186296-186665 bp Feature: domain Description: HELICc Location: 1 86296-1 86665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), SusD (NF033071), RVT-GII, GIIM (pfam08388), TlpA_like_family (cd02966), DUF4134 (pfam13572), DUF1896 (pfam08989), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490)