myRT

myRT report for GCA_001898935.1_ASM189893v1

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Seq: MKVT01000022.1 Paludibacter sp. 47-17 scnpilot_p_inoc_scaffold_3994, whole genome shotgun sequence (8783 bp)
Overview 1 RT 1: 3713-8098 bp Neighborhood of RT #1 [3713, 8098] RVT-GII GIIM Feature: gene Location: 3713-4111 bp Feature: gene Location: 4129-4440 bp Feature: gene Location: 4404-5645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-5268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4608-5268 bp Feature: domain Description: GIIM Note: maturase Location: 5352-5559 bp Feature: domain Description: GIIM Note: maturase Location: 5352-5559 bp Feature: gene Location: 6064-7680 bp Feature: gene Location: 7667-8098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MKVT01000014.1 Paludibacter sp. 47-17 scnpilot_p_inoc_scaffold_29, whole genome shotgun sequence (413193 bp)
Overview 1 RT 1: 34-4740 bp Neighborhood of RT #1 [34, 4748] RVT-GII GIIM RecN DUF4835 Feature: gene Location: 34-1356 bp Ori: OJX90172.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235-850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 35-850 bp Feature: domain Description: GIIM Note: maturase Location: 922-1135 bp Feature: domain Description: GIIM Note: maturase Location: 92 2 -1135 bp Feature: gene Location: 2195-3853 bp Ori: OJX90173.1 Feature: domain Description: RecN Location: 2198-3845 bp Feature: domain Description: RecN Location: 2 198-3845 bp Feature: gene Location: 3858-4748 bp Ori: OJX90456.1 Feature: domain Description: DUF4835 Location: 3918-4740 bp Feature: domain Description: DUF4835 Location: 3918-4740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RecN (COG0497), DUF4835 (pfam16119)

Seq: MKVT01000015.1 Paludibacter sp. 47-17 scnpilot_p_inoc_scaffold_293, whole genome shotgun sequence (116151 bp)
Overview 1 RT 1: 96019-101822 bp Neighborhood of RT #1 [96019, 101836] SAVED Cas6_III CRISPR_Cas6 RVT-CRISPR cas1 Cas2_I_II_III Pentapeptide Pentapeptide Feature: gene Location: 96019-96555 bp Ori: OJX90106.1 Feature: domain Description: SAVED Location: 96265-96529 bp Feature: domain Description: SAVED Location: 96265-96529 bp Feature: gene Location: 96632-97579 bp Ori: OJX90107.1 Feature: domain Description: Cas6_III Location: 96704-97115 bp Feature: domain Description: Cas6_III Location: 96704-97115 bp Feature: domain Description: CRISPR_Cas6 Location: 97199-97568 bp Feature: domain Description: CRISPR_Cas6 Location: 97199-97568 bp Feature: gene Location: 98938-101205 bp Ori: OJX90108.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 99145-99757 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 99145-99757 bp Feature: domain Description: cas1 Location: 100207-101176 bp Feature: domain Description: cas1 Location: 100207-101176 bp Feature: gene Location: 101199-101486 bp Ori: OJX90109.1 Feature: domain Description: Cas2_I_II_III Location: 101223-101451 bp Feature: domain Description: Cas2_I_II_III Location: 101223 -101451 bp Feature: gene Location: 101495-101836 bp Ori: OJX90110.1 Feature: domain Description: Pentapeptide Location: 101582-101690 bp Feature: domain Description: Pentapeptide Location: 101582-101690 bp Feature: domain Description: Pentapeptide Location: 101717-101822 bp Feature: domain Description: Pentapeptide Location: 101717-101822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SAVED (pfam18145), Cas6_III (cd09760), CRISPR_Cas6 (pfam10040), RVT-CRISPR, cas1 (TIGR00287), Cas2_I_II_III (cl11442), Pentapeptide (pfam00805)