myRT

myRT report for GCA_001899545.1_ASM189954v1

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Seq: MKWB01000032.1 Rhizobium sp. 60-20 SCNpilot_cont_300_bf_scaffold_317, whole genome shotgun sequence (70901 bp)
Overview 1 RT 1: 55096-60540 bp Neighborhood of RT #1 [55096, 60540] RVT-GII Intron_maturas2 Feature: gene Location: 55096-55281 bp Feature: gene Location: 55897-56106 bp Feature: gene Location: 57022-58932 bp Ori: OJY70792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57334-58165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57334-581 65 bp Feature: domain Description: Intron_maturas2 Location: 58291-58558 bp Feature: domain Description: Intron_maturas2 Location: 58291 -58558 bp Feature: gene Location: 59188-59601 bp Feature: gene Location: 60124-60540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: MKWB01000038.1 Rhizobium sp. 60-20 SCNpilot_cont_300_bf_scaffold_384, whole genome shotgun sequence (54884 bp)
Overview 1 RT 1: 8825-14712 bp Neighborhood of RT #1 [8825, 14783] PHP_HisPPase_Hisj_like RimL RVT-GII GIIM Rve PRK10815 Feature: gene Location: 8825-9700 bp Ori: OJY68351.1 Feature: domain Description: PHP_HisPPase_Hisj_like Location: 8849-9596 bp Feature: domain Description: PHP_HisPPase_Hisj_like Location: 8849-9596 bp Feature: gene Location: 9703-10239 bp Ori: OJY68352.1 Feature: domain Description: RimL Location: 9898-10213 bp Feature: domain Description: RimL Location: 9898-102 13 bp Feature: gene Location: 11263-12522 bp Ori: OJY68353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11467-12121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11467-12 12 1 bp Feature: domain Description: GIIM Note: maturase Location: 12205-12433 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 05-12 433 bp Feature: gene Location: 12585-13049 bp Feature: domain Description: Rve Location: 12591-12999 bp Feature: domain Description: Rve Location: 12 591-12 999 bp Feature: gene Location: 13389-14783 bp Ori: OJY68354.1 Feature: domain Description: PRK10815 Location: 13947-14712 bp Feature: domain Description: PRK10815 Location: 13947-14712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase_Hisj_like (cd12110), RimL (COG1670), RVT-GII, GIIM (pfam08388), Rve (COG3316), PRK10815 (two-component system sensor histidine kinase PhoQ)

Seq: MKWB01000058.1 Rhizobium sp. 60-20 SCNpilot_cont_300_bf_scaffold_897, whole genome shotgun sequence (38295 bp)
Overview 1 RT 1: 291-11947 bp Neighborhood of RT #1 [291, 11964] RVT-Retrons HTH_XRE couple_hipB RVT-AbiP2 Mrr_cat COG3183 Feature: gene Location: 291-1019 bp Ori: OJY61653.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297-654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297-654 bp Feature: gene Location: 1333-1635 bp Ori: OJY61684.1 Feature: domain Description: HTH_XRE Location: 1348-1510 bp Feature: domain Description: HTH_XRE Location: 13 48-1510 bp Feature: gene Location: 2256-5981 bp Feature: gene Location: 6312-6566 bp Ori: OJY61655.1 Feature: domain Description: couple_hipB Location: 6333-6429 bp Feature: domain Description: couple_hipB Location: 63 3 3 -6429 bp Feature: gene Location: 6854-7045 bp Feature: gene Location: 8322-9818 bp Ori: OJY61656.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8739-9186 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 873 9-9186 bp Feature: gene Location: 9815-10681 bp Ori: OJY61657.1 Feature: domain Description: Mrr_cat Location: 10271-10583 bp Feature: domain Description: Mrr_cat Location: 10271-10583 bp Feature: gene Location: 11062-11964 bp Ori: OJY61658.1 Feature: domain Description: COG3183 Location: 11644-11947 bp Feature: domain Description: COG3 183 Location: 11644-11947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), couple_hipB (TIGR03070), RVT-AbiP2, Mrr_cat (pfam04471), COG3183 (Predicted restriction endonuclease, HNH family )