myRT

myRT report for GCA_001899565.1_ASM189956v1

Download annotations/find similar RTs

Seq: MKWC01000007.1 Rhodanobacter sp. 68-29 SCNpilot_bf_inoc_scaffold_174, whole genome shotgun sequence (233038 bp)
Overview 1 RT 1: 129104-133860 bp Neighborhood of RT #1 [129104, 133860] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 129104-129490 bp Feature: domain Description: DUF1566 Location: 129134-129470 bp Feature: domain Description: DUF1 566 Location: 1 291 34-1 29470 bp Feature: gene Location: 129533-129946 bp Feature: domain Description: Avd_like Location: 129539-129845 bp Feature: domain Description: Avd_like Location: 1 29539-1 29845 bp Feature: gene Location: 129965-131359 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 130316-131012 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 3031 6-1 31 01 2 bp Feature: gene Location: 131331-132296 bp Feature: gene Location: 132289-133860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: MKWC01000011.1 Rhodanobacter sp. 68-29 SCNpilot_bf_inoc_scaffold_205, whole genome shotgun sequence (285348 bp)
Overview 1 RT 1: 195064-202098 bp Neighborhood of RT #1 [195064, 202151] PRK05659 FecR RVT_N RVT-GII GIIM HNHc COG4067 PRK10446 Feature: gene Location: 195064-195264 bp Feature: domain Description: PRK05659 Location: 195067-195262 bp Feature: domain Description: PRK05659 Location: 195067-1952 62 bp Feature: gene Location: 195351-197663 bp Feature: domain Description: FecR Location: 195594-195882 bp Feature: domain Description: FecR Location: 195594-195882 bp Feature: gene Location: 198880-200505 bp Feature: RT Description: RVT_N Location: 198931-199174 bp Feature: RT Description: RVT_N Location: 198931-199174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199219-199843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992 19-199843 bp Feature: domain Description: GIIM Note: maturase Location: 199897-200128 bp Feature: domain Description: GIIM Note: maturase Location: 199897-2 0012 8 bp Feature: domain Description: HNHc Note: nucleases Location: 200329-200485 bp Feature: domain Description: HNHc Note: nucleases Location: 2 0032 9-2 00485 bp Feature: gene Location: 200779-201231 bp Feature: domain Description: COG4067 Location: 200791-201199 bp Feature: domain Description: COG4067 Location: 2 00791-2 01199 bp Feature: gene Location: 201228-202151 bp Feature: domain Description: PRK10446 Location: 201231-202098 bp Feature: domain Description: PRK10446 Location: 2 012 31-2 02 098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05659 (sulfur carrier protein ThiS; Validated), FecR (pfam04773), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG4067 (Uncharacterized conserved protein ), PRK10446 (30S ribosomal protein S6--L-glutamate ligase)

Seq: MKWC01000004.1 Rhodanobacter sp. 68-29 SCNpilot_bf_inoc_scaffold_132, whole genome shotgun sequence (677083 bp)
Overview 1 RT 1: 498195-502669 bp Neighborhood of RT #1 [498195, 502695] Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 498195-500117 bp Feature: domain Description: Dcm Location: 498276-500094 bp Feature: domain Description: Dcm Location: 498276-500094 bp Feature: gene Location: 500110-500352 bp Feature: gene Location: 500408-501766 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 500768-501467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 500768-501467 bp Feature: gene Location: 501763-502197 bp Feature: domain Description: Avd_like Location: 501790-502099 bp Feature: domain Description: Avd_like Location: 501790-502099 bp Feature: gene Location: 502228-502695 bp Feature: domain Description: DUF1566 Location: 502375-502669 bp Feature: domain Description: DUF1566 Location: 5023 75-502669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)