myRT

myRT report for GCA_001901545.1_ASM190154v1

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Seq: MIGD01000006.1 Escherichia coli strain YDC774 scf7180000000021, whole genome shotgun sequence (4377024 bp)
Overview 1 RT 1: 2185040-2191100 bp 2 RT 2: 2502898-2510130 bp 3 RT 3: 3056006-3059606 bp Neighborhood of RT #1 [2185040, 2191102] FmrO Zn_Tnp_IS91 Y2_Tnp RVT-GII GIIM Rve PRK11053 Neighborhood of RT #2 [2502898, 2510165] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 proA Neighborhood of RT #3 [3056006, 3059606] DDE_Tnp_1 RVT-GII GIIM PHA02517 Feature: gene Location: 2185040-2185861 bp Ori: OKA60459.1 Feature: domain Description: FmrO Location: 2185079-2185823 bp Feature: domain Description: FmrO Location: 21 85079-21 85823 bp Feature: gene Location: 2186189-2187481 bp Ori: OKA60460.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2186234-2186507 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21 86234-21 86507 bp Feature: domain Description: Y2_Tnp Location: 2186645-2187134 bp Feature: domain Description: Y2_Tnp Location: 21 86645-21 871 34 bp Feature: gene Location: 2187643-2188992 bp Ori: OKA60461.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2187925-2188543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 87925-21 88543 bp Feature: domain Description: GIIM Note: maturase Location: 2188591-2188795 bp Feature: domain Description: GIIM Note: maturase Location: 21 88591 -21 88795 bp Feature: gene Location: 2189702-2190406 bp Ori: OKA60462.1 Feature: domain Description: Rve Location: 2189705-2190350 bp Feature: domain Description: Rve Location: 21 89705-21 90350 bp Feature: gene Location: 2190446-2191102 bp Ori: OKA60463.1 Feature: domain Description: PRK11053 Location: 2190458-2191100 bp Feature: domain Description: PRK1 1 053 Location: 21 90458-21 91 1 00 bp Feature: gene Location: 2502898-2503452 bp Ori: OKA60724.1 Feature: domain Description: Psu Location: 2502922-2503432 bp Feature: domain Description: Psu Location: 2502922-2503432 bp Feature: gene Location: 2503454-2503726 bp Ori: OKA60725.1 Feature: domain Description: PRK09678 Location: 2503463-2503631 bp Feature: domain Description: PRK09678 Location: 2503463-2503631 bp Feature: gene Location: 2504175-2506178 bp Ori: OKA60726.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2504670-2505117 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2504670-25051 1 7 bp Feature: gene Location: 2506182-2507378 bp Ori: OKA60727.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2506467-2506929 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2506467-2506929 bp Feature: gene Location: 2507380-2508558 bp Ori: OKA60728.1 Feature: domain Description: PRK09692 Location: 2507386-2508544 bp Feature: domain Description: PRK09692 Location: 2507386-2508544 bp Feature: gene Location: 2508912-2510165 bp Ori: OKA60729.1 Feature: domain Description: proA Location: 2508939-2510130 bp Feature: domain Description: proA Location: 2508939-251 01 30 bp Feature: gene Location: 3056006-3056884 bp Ori: OKA61219.1 Feature: domain Description: DDE_Tnp_1 Location: 3056012-3056654 bp Feature: domain Description: DDE_Tnp_1 Location: 305601 2-3056654 bp Feature: gene Location: 3057046-3057279 bp Feature: gene Location: 3057336-3058718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057468-3058200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057468-3058200 bp Feature: domain Description: GIIM Note: maturase Location: 3058275-3058473 bp Feature: domain Description: GIIM Note: maturase Location: 3058275-3058473 bp Feature: gene Location: 3058895-3059281 bp Ori: OKA61221.1 Feature: domain Description: PHA02517 Location: 3058898-3059279 bp Feature: domain Description: PHA0251 7 Location: 3058898-3059279 bp Feature: gene Location: 3059481-3059606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FmrO (pfam07091), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-GII, GIIM (pfam08388), Rve (COG3316), PRK11053 (oxygen-insensitive NAD(P)H nitroreductase), Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8
RVT-UG3, PRK09692 (Integrase; provisional), proA (TIGR00407), DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed)