myRT

myRT report for GCA_001901805.1_ASM190180v1

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Seq: LYPW01000210.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_rep_c210, whole genome shotgun sequence (1980 bp)
Overview 1 RT 1: 1-1093 bp Neighborhood of RT #1 [1, 1301] RVT-GII Feature: gene Location: 1-1301 bp Ori: OKB54082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1 093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LYPW01000174.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c8, whole genome shotgun sequence (172627 bp)
Overview 1 RT 1: 169738-172182 bp Neighborhood of RT #1 [169738, 172574] Acetyltransf_10 TisB_tox RVT-GII Feature: gene Location: 169738-170184 bp Ori: OKB56213.1 Feature: domain Description: Acetyltransf_10 Location: 169855-170155 bp Feature: domain Description: Acetyltransf_10 Location: 169855-170155 bp Feature: gene Location: 170275-170364 bp Ori: OKB56214.1 Feature: domain Description: TisB_tox Location: 170278-170362 bp Feature: domain Description: TisB_tox Location: 1702 78-170362 bp Feature: gene Location: 171090-172574 bp Ori: OKB56215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171492-172182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171492 -172 182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), TisB_tox (TIGR04459), RVT-GII

Seq: LYPW01000013.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c11, whole genome shotgun sequence (139329 bp)
Overview 1 RT 1: 85180-92458 bp Neighborhood of RT #1 [85180, 92458] PRK08178 PRK08155 RVT-GII Feature: gene Location: 85180-85467 bp Ori: OKB63774.1 Feature: domain Description: PRK08178 Location: 85186-85465 bp Feature: domain Description: PRK08178 Location: 85186-85465 bp Feature: gene Location: 85471-87158 bp Feature: domain Description: PRK08155 Location: 85474-86716 bp Feature: domain Description: PRK08155 Location: 85474-86716 bp Feature: gene Location: 87720-89204 bp Ori: OKB63775.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88122-88812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88122-88812 bp Feature: gene Location: 89656-90456 bp Feature: gene Location: 90466-92458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08178 (acetolactate synthase 1 small subunit), PRK08155 (acetolactate synthase large subunit), RVT-GII

Seq: LYPW01000108.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c2, whole genome shotgun sequence (59930 bp)
Overview 1 RT 1: 1-4024 bp Neighborhood of RT #1 [1, 4026] PRK10276 RVT-GII PRK10276 umuC Feature: gene Location: 1-366 bp Ori: OKB62728.1 Feature: domain Description: PRK10276 Location: 52-358 bp Feature: domain Description: PRK10276 Location: 52-358 bp Feature: gene Location: 776-2260 bp Ori: OKB62685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1868 bp Feature: gene Location: 2340-2759 bp Ori: OKB62729.1 Feature: domain Description: PRK10276 Location: 2343-2754 bp Feature: domain Description: PRK10276 Location: 234 3-2754 bp Feature: gene Location: 2761-4026 bp Ori: OKB62686.1 Feature: domain Description: umuC Location: 2764-4024 bp Feature: domain Description: umuC Location: 2764 -4 024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, umuC (PRK03609)

Seq: LYPW01000146.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c54, whole genome shotgun sequence (127709 bp)
Overview 1 RT 1: 83385-87617 bp Neighborhood of RT #1 [83385, 87673] PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Feature: gene Location: 83385-83702 bp Ori: OKB58431.1 Feature: domain Description: PRK10276 Location: 83391-83508 bp Feature: domain Description: PRK10276 Location: 83391-835 08 bp Feature: gene Location: 83702-83941 bp Feature: gene Location: 84020-85504 bp Ori: OKB58433.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84422-85112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84422-85 112 bp Feature: gene Location: 86121-86363 bp Ori: OKB58434.1 Feature: domain Description: DinI Location: 86172-86352 bp Feature: domain Description: DinI Location: 86172-8635 2 bp Feature: gene Location: 86534-87673 bp Ori: OKB58435.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 86717-87617 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 86717-87617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789)

Seq: LYPW01000165.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c71, whole genome shotgun sequence (33665 bp)
Overview 1 RT 1: 29681-33665 bp Neighborhood of RT #1 [29681, 33665] SbcB dacD RVT-GII Feature: gene Location: 29681-31105 bp Ori: OKB56855.1 Feature: domain Description: SbcB Location: 29687-31103 bp Feature: domain Description: SbcB Location: 296 87-31103 bp Feature: gene Location: 31286-32449 bp Ori: OKB56857.1 Feature: domain Description: dacD Location: 31289-32444 bp Feature: domain Description: dacD Location: 31289-32444 bp Feature: gene Location: 32969-33665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33371-33665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33371-336 6 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII

Seq: LYPW01000136.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c45, whole genome shotgun sequence (7652 bp)
Overview 1 RT 1: 1-3786 bp Neighborhood of RT #1 [1, 3800] PRK10276 RVT-GII PRK10016 YccC Feature: gene Location: 1-194 bp Feature: domain Description: PRK10276 Location: 49-190 bp Feature: domain Description: PRK1027 6 Location: 49-190 bp Feature: gene Location: 604-2088 bp Ori: OKB59490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1696 bp Feature: gene Location: 2170-2643 bp Ori: OKB59491.1 Feature: domain Description: PRK10016 Location: 2173-2632 bp Feature: domain Description: PRK10016 Location: 217 3-2632 bp Feature: gene Location: 2742-3800 bp Ori: OKB59492.1 Feature: domain Description: YccC Location: 2748-3786 bp Feature: domain Description: YccC Location: 27 48-37 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: LYPW01000001.1 Klebsiella pneumoniae strain YMC2012/8/C631 IonXpress_008_rawlib.basecaller_c1, whole genome shotgun sequence (203692 bp)
Overview 1 RT 1: 18406-22494 bp Neighborhood of RT #1 [18406, 22494] InsE HTH_21 RVT-GII GIIM PHA02517 Feature: gene Location: 18406-18705 bp Ori: OKB64026.1 Feature: domain Description: InsE Location: 18433-18700 bp Feature: domain Description: InsE Location: 18 433-18 700 bp Feature: gene Location: 18702-19104 bp Feature: domain Description: HTH_21 Location: 18855-18993 bp Feature: domain Description: HTH_21 Location: 18 8 55-18 993 bp Feature: gene Location: 19777-21285 bp Ori: OKB64183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20035-20767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20035-20767 bp Feature: domain Description: GIIM Note: maturase Location: 20842-21040 bp Feature: domain Description: GIIM Note: maturase Location: 208 42-21040 bp Feature: gene Location: 21450-21827 bp Ori: OKB64027.1 Feature: domain Description: PHA02517 Location: 21459-21822 bp Feature: domain Description: PHA02517 Location: 21459-218 22 bp Feature: gene Location: 22330-22494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)