myRT

myRT report for GCA_001903685.4_ASM190368v4

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Seq: MPYL04000059.1 Klebsiella pneumoniae strain CRK0102 CRK0102_NODE_43.ctg_1, whole genome shotgun sequence (19230 bp)
Overview 1 RT 1: 2346-6445 bp Neighborhood of RT #1 [2346, 6567] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2346-2576 bp Feature: gene Location: 2839-3096 bp Feature: gene Location: 3976-5643 bp Ori: RNQ92596.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4024-4261 bp Feature: domain Description: RVT_N Location: 4024-4261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4312-4954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 2-4954 bp Feature: domain Description: GIIM Note: maturase Location: 5005-5239 bp Feature: domain Description: GIIM Note: maturase Location: 5005-5239 bp Feature: domain Description: HNHc Note: nucleases Location: 5449-5608 bp Feature: domain Description: HNHc Note: nucleases Location: 5449-5608 bp Feature: gene Location: 5957-6148 bp Feature: gene Location: 6145-6567 bp Ori: RNQ92598.1 Feature: domain Description: DUF1380 Location: 6148-6445 bp Feature: domain Description: DUF1 380 Location: 61 48-6445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MPYL04000004.1 Klebsiella pneumoniae strain CRK0102 CRK0102_NODE_54.ctg_1, whole genome shotgun sequence (1974 bp)
Overview 1 RT 1: 651-1725 bp Neighborhood of RT #1 [651, 1904] RVT-GII GIIM Feature: gene Location: 651-1904 bp Ori: RNR04178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1467 bp Feature: domain Description: GIIM Note: maturase Location: 1506-1725 bp Feature: domain Description: GIIM Note: maturase Location: 1506-172 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPYL04000035.1 Klebsiella pneumoniae strain CRK0102 CRK0102_NODE_8.ctg_1, whole genome shotgun sequence (237413 bp)
Overview 1 RT 1: 29856-35160 bp Neighborhood of RT #1 [29856, 35162] PRK10276 umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 29856-30275 bp Ori: RNQ98157.1 Feature: domain Description: PRK10276 Location: 29859-30270 bp Feature: domain Description: PRK10276 Location: 29859-3 0270 bp Feature: gene Location: 30277-31542 bp Ori: RNQ98158.1 Gene: umuC Feature: domain Description: umuC Location: 30280-31540 bp Feature: domain Description: umuC Location: 3 0280-3 1540 bp Feature: gene Location: 32215-33123 bp Ori: RNQ98159.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 32488-32944 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3 2488-3 2944 bp Feature: gene Location: 33324-33992 bp Ori: RNQ98160.1 Feature: domain Description: PRK09951 Location: 33327-33990 bp Feature: domain Description: PRK09951 Location: 3 3 3 27-3 3 990 bp Feature: gene Location: 34197-35162 bp Ori: RNQ98161.1 Gene: sapB Feature: domain Description: PRK15110 Location: 34200-35160 bp Feature: domain Description: PRK15110 Location: 3 4200-3 5160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)

Seq: MPYL04000073.1 Klebsiella pneumoniae strain CRK0102 CRK0102_NODE_5.ctg_1, whole genome shotgun sequence (295725 bp)
Overview 1 RT 1: 137957-141015 bp Neighborhood of RT #1 [137957, 141017] RVT-Retrons HTH_XRE DinI Feature: gene Location: 137957-138151 bp Feature: gene Location: 138150-138581 bp Feature: gene Location: 138720-139670 bp Ori: RNQ90095.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-139443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-1394 4 3 bp Feature: gene Location: 139648-139956 bp Ori: RNQ90096.1 Feature: domain Description: HTH_XRE Location: 139660-139825 bp Feature: domain Description: HTH_XRE Location: 139660-139825 bp Feature: gene Location: 140577-141017 bp Ori: RNQ90097.1 Feature: domain Description: DinI Location: 140832-141015 bp Feature: domain Description: DinI Location: 14 0832-14 1015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DinI (pfam06183)