myRT

myRT report for GCA_001904245.4_ASM190424v4

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Seq: MPYK04000056.1 Klebsiella pneumoniae strain CRK0103 CRK0103_NODE_2.ctg_1, whole genome shotgun sequence (467106 bp)
Overview 1 RT 1: 219552-224435 bp Neighborhood of RT #1 [219552, 224437] umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 219552-220817 bp Ori: RNQ92350.1 Gene: umuC Feature: domain Description: umuC Location: 219555-220815 bp Feature: domain Description: umuC Location: 21 9555-22081 5 bp Feature: gene Location: 220973-221230 bp Feature: gene Location: 221490-222398 bp Ori: RNQ92352.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 221763-222219 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 221 763-22221 9 bp Feature: gene Location: 222599-223267 bp Ori: RNQ92353.1 Feature: domain Description: PRK09951 Location: 222602-223265 bp Feature: domain Description: PRK09951 Location: 222602-223265 bp Feature: gene Location: 223472-224437 bp Ori: RNQ92354.1 Gene: sapB Feature: domain Description: PRK15110 Location: 223475-224435 bp Feature: domain Description: PRK1 51 1 0 Location: 223475-224435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)

Seq: MPYK04000064.1 Klebsiella pneumoniae strain CRK0103 CRK0103_NODE_6.ctg_1, whole genome shotgun sequence (295493 bp)
Overview 1 RT 1: 137957-141015 bp Neighborhood of RT #1 [137957, 141017] RVT-Retrons HTH_XRE DinI Feature: gene Location: 137957-138151 bp Feature: gene Location: 138150-138581 bp Feature: gene Location: 138720-139670 bp Ori: RNQ89334.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-139443 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138900-139443 bp Feature: gene Location: 139648-139956 bp Ori: RNQ89335.1 Feature: domain Description: HTH_XRE Location: 139660-139825 bp Feature: domain Description: HTH_XRE Location: 139660-13982 5 bp Feature: gene Location: 140577-141017 bp Ori: RNQ89336.1 Feature: domain Description: DinI Location: 140832-141015 bp Feature: domain Description: DinI Location: 140832 -141015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DinI (pfam06183)

Seq: MPYK04000067.1 Klebsiella pneumoniae strain CRK0103 CRK0103_NODE_38.ctg_1, whole genome shotgun sequence (19230 bp)
Overview 1 RT 1: 2346-6445 bp Neighborhood of RT #1 [2346, 6567] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2346-2576 bp Feature: gene Location: 2839-3096 bp Feature: gene Location: 3976-5643 bp Ori: RNQ88931.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4024-4261 bp Feature: domain Description: RVT_N Location: 4024-4261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4312-4954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 12-4954 bp Feature: domain Description: GIIM Note: maturase Location: 5005-5239 bp Feature: domain Description: GIIM Note: maturase Location: 5005-523 9 bp Feature: domain Description: HNHc Note: nucleases Location: 5449-5608 bp Feature: domain Description: HNHc Note: nucleases Location: 5449-5608 bp Feature: gene Location: 5957-6148 bp Feature: gene Location: 6145-6567 bp Ori: RNQ88933.1 Feature: domain Description: DUF1380 Location: 6148-6445 bp Feature: domain Description: DUF13 80 Location: 6148-6445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: MPYK04000047.1 Klebsiella pneumoniae strain CRK0103 CRK0103_NODE_55.ctg_1, whole genome shotgun sequence (1974 bp)
Overview 1 RT 1: 651-1725 bp Neighborhood of RT #1 [651, 1904] RVT-GII GIIM Feature: gene Location: 651-1904 bp Ori: RNQ93501.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 3-14 67 bp Feature: domain Description: GIIM Note: maturase Location: 1506-1725 bp Feature: domain Description: GIIM Note: maturase Location: 1506-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)