myRT

myRT report for GCA_001904715.1_ASM190471v1

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Seq: MRBZ01000085.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_85, whole genome shotgun sequence (37820 bp)
Overview 1 RT 1: 325-4584 bp Neighborhood of RT #1 [325, 4676] RVT_N RVT-GII GIIM McrA Relaxase MobC Feature: gene Location: 325-2115 bp Ori: OKH31215.1 Feature: domain Description: RVT_N Location: 400-646 bp Feature: domain Description: RVT_N Location: 400-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688-1 372 bp Feature: domain Description: GIIM Note: maturase Location: 1483-1699 bp Feature: domain Description: GIIM Note: maturase Location: 1 483-1 699 bp Feature: domain Description: McrA Location: 1801-2068 bp Feature: domain Description: McrA Location: 1 801 -2068 bp Feature: gene Location: 3740-4291 bp Feature: domain Description: Relaxase Location: 3773-4256 bp Feature: domain Description: Relaxase Location: 3773-4256 bp Feature: gene Location: 4266-4676 bp Ori: OKH31216.1 Feature: domain Description: MobC Location: 4464-4584 bp Feature: domain Description: MobC Location: 4464-4584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Relaxase (pfam03432), MobC (pfam05713)

Seq: MRBZ01000102.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_102, whole genome shotgun sequence (32064 bp)
Overview 1 RT 1: 3767-9382 bp Neighborhood of RT #1 [3767, 9382] clpC RVT-Retrons Feature: gene Location: 3767-6235 bp Ori: OKH30194.1 Feature: domain Description: clpC Location: 3770-6185 bp Feature: domain Description: clpC Location: 3770-6185 bp Feature: gene Location: 6336-7211 bp Feature: gene Location: 7236-8306 bp Ori: OKH30196.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7410-8016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7410-8016 bp Feature: gene Location: 8827-9165 bp Feature: gene Location: 9113-9382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpC, RVT-Retrons

Seq: MRBZ01000219.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_219, whole genome shotgun sequence (11353 bp)
Overview 1 RT 1: 5355-11275 bp Neighborhood of RT #1 [5355, 11286] Aes NERD UvrD HelD RVT-UG19 AroE Feature: gene Location: 5355-6623 bp Ori: OKH17921.1 Feature: domain Description: Aes Location: 5829-6597 bp Feature: domain Description: Aes Location: 5829-6597 bp Feature: gene Location: 6855-8423 bp Ori: OKH17922.1 Feature: domain Description: NERD Location: 6903-7245 bp Feature: domain Description: NERD Location: 6903 -7245 bp Feature: domain Description: UvrD Location: 7491-7620 bp Feature: domain Description: UvrD Location: 7491-7620 bp Feature: domain Description: HelD Location: 7728-8394 bp Feature: domain Description: HelD Location: 7728-83 94 bp Feature: gene Location: 8434-10212 bp Ori: OKH17923.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 8878-9382 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 8878-93 82 bp Feature: gene Location: 10408-11286 bp Ori: OKH17924.1 Feature: domain Description: AroE Location: 10423-11275 bp Feature: domain Description: AroE Location: 10423 -11275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), NERD (pfam08378), UvrD (COG0210), HelD (COG3973), RVT-UG19, AroE (COG0169)

Seq: MRBZ01000128.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_128, whole genome shotgun sequence (26695 bp)
Overview 1 RT 1: 17269-26280 bp Neighborhood of RT #1 [17269, 26294] YadD Pentapeptide_3 Pentapeptide_3 Pentapeptide_3 Pentapeptide_3 HHH_3 RVT_N RVT-GII GIIM HNH MDR6 ftsH Feature: gene Location: 17269-18159 bp Ori: OKH28667.1 Feature: domain Description: YadD Location: 17272-18109 bp Feature: domain Description: YadD Location: 17272-18109 bp Feature: gene Location: 18213-20450 bp Ori: OKH28668.1 Feature: domain Description: Pentapeptide_3 Location: 18780-18900 bp Feature: domain Description: Pentapeptide_3 Location: 18780-18900 bp Feature: domain Description: Pentapeptide_3 Location: 18909-19041 bp Feature: domain Description: Pentapeptide_3 Location: 18909-1904 1 bp Feature: domain Description: Pentapeptide_3 Location: 19101-19188 bp Feature: domain Description: Pentapeptide_3 Location: 19101-19188 bp Feature: domain Description: Pentapeptide_3 Location: 19200-19329 bp Feature: domain Description: Pentapeptide_3 Location: 19200-19329 bp Feature: domain Description: HHH_3 Location: 19560-19725 bp Feature: domain Description: HHH_3 Location: 19560-19725 bp Feature: gene Location: 20817-22688 bp Feature: domain Description: RVT_N Location: 20856-21102 bp Feature: domain Description: RVT_N Location: 20856-21102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21144-21831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114 4 -21831 bp Feature: domain Description: GIIM Note: maturase Location: 21915-22143 bp Feature: domain Description: GIIM Note: maturase Location: 21915-2214 3 bp Feature: domain Description: HNH Note: nucleases Location: 22368-22503 bp Feature: domain Description: HNH Note: nucleases Location: 22368-22503 bp Feature: gene Location: 23282-23944 bp Feature: domain Description: MDR6 Location: 23291-23930 bp Feature: domain Description: MDR6 Location: 23291-23930 bp Feature: gene Location: 24405-26294 bp Ori: OKH28669.1 Feature: domain Description: ftsH Location: 24531-26280 bp Feature: domain Description: ftsH Location: 24 531-26280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YadD (COG5464), Pentapeptide_3 (pfam13576), HHH_3 (pfam12836), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MDR6 (cd08272), ftsH (CHL00176)

Seq: MRBZ01000077.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_77, whole genome shotgun sequence (40561 bp)
Overview 1 RT 1: 30088-36975 bp Neighborhood of RT #1 [30088, 37025] RTPR RNR_II_monomer RVT_N RVT-GII GIIM McrA RTPR SUL1 Feature: gene Location: 30088-31161 bp Feature: domain Description: RTPR Location: 30091-31138 bp Feature: domain Description: RTPR Location: 30091-31138 bp Feature: gene Location: 31507-32349 bp Feature: domain Description: RNR_II_monomer Location: 31516-32350 bp Feature: domain Description: RNR_II_monomer Location: 315 16-3235 0 bp Feature: gene Location: 32368-34197 bp Ori: OKH31939.1 Feature: domain Description: RVT_N Location: 32410-32656 bp Feature: domain Description: RVT_N Location: 32410-3265 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32698-33382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32698-33382 bp Feature: domain Description: GIIM Note: maturase Location: 33484-33718 bp Feature: domain Description: GIIM Note: maturase Location: 33484-33718 bp Feature: domain Description: McrA Location: 33814-34087 bp Feature: domain Description: McrA Location: 33814-34087 bp Feature: gene Location: 34833-35222 bp Ori: OKH31940.1 Feature: domain Description: RTPR Location: 34857-35205 bp Feature: domain Description: RTPR Location: 3485 7-35 205 bp Feature: gene Location: 35502-37025 bp Ori: OKH31941.1 Feature: domain Description: SUL1 Location: 35535-36975 bp Feature: domain Description: SUL1 Location: 35 5 35 -36975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), RNR_II_monomer (cd01676), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), SUL1 (COG0659)

Seq: MRBZ01000114.1 Nostoc calcicola FACHB-389 FACHB-389_Scaffold_114, whole genome shotgun sequence (29880 bp)
Overview 1 RT 1: 18712-25225 bp Neighborhood of RT #1 [18712, 25225] RVT_N RVT-GII GIIM HNH Feature: gene Location: 18712-19467 bp Feature: gene Location: 19613-21514 bp Feature: gene Location: 21739-23559 bp Ori: OKH29674.1 Feature: domain Description: RVT_N Location: 21778-22024 bp Feature: domain Description: RVT_N Location: 21778-22024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22066-22762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2206 6 -2276 2 bp Feature: domain Description: GIIM Note: maturase Location: 22867-23095 bp Feature: domain Description: GIIM Note: maturase Location: 2286 7-23095 bp Feature: domain Description: HNH Note: nucleases Location: 23320-23455 bp Feature: domain Description: HNH Note: nucleases Location: 23320-23455 bp Feature: gene Location: 24138-24815 bp Feature: gene Location: 24815-25225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)