myRT

myRT report for GCA_001904725.1_ASM190472v1

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Seq: MRCE01000089.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_89, whole genome shotgun sequence (2462 bp)
Overview 1 RT 1: 633-2343 bp Neighborhood of RT #1 [633, 2366] RVT_N RVT-GII GIIM McrA Feature: gene Location: 633-2366 bp Ori: OKH29563.1 Feature: domain Description: RVT_N Location: 669-915 bp Feature: domain Description: RVT_N Location: 669-91 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1 641 bp Feature: domain Description: GIIM Note: maturase Location: 1743-1974 bp Feature: domain Description: GIIM Note: maturase Location: 1 743-1 974 bp Feature: domain Description: McrA Location: 2070-2343 bp Feature: domain Description: McrA Location: 2070-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000032.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_32, whole genome shotgun sequence (71511 bp)
Overview 1 RT 1: 91-3816 bp Neighborhood of RT #1 [91, 4832] RVT_N RVT_N RVT-GII GIIM McrA RVT_N DUF3854 Feature: gene Location: 91-267 bp Feature: domain Description: RVT_N Location: 109-259 bp Feature: domain Description: RVT_N Location: 109-2 59 bp Feature: gene Location: 248-2033 bp Feature: domain Description: RVT_N Location: 272-518 bp Feature: domain Description: RVT_N Location: 2 72 -518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-1220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-12 2 0 bp Feature: domain Description: GIIM Note: maturase Location: 1298-1532 bp Feature: domain Description: GIIM Note: maturase Location: 12 98-1532 bp Feature: domain Description: McrA Location: 1631-1910 bp Feature: domain Description: McrA Location: 1631-1910 bp Feature: gene Location: 2647-2751 bp Feature: domain Description: RVT_N Location: 2683-2749 bp Feature: domain Description: RVT_N Location: 2 683-2 749 bp Feature: gene Location: 3009-4832 bp Ori: OKH33124.1 Feature: domain Description: DUF3854 Location: 3441-3816 bp Feature: domain Description: DUF3854 Location: 3441-3816 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000029.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_29, whole genome shotgun sequence (74215 bp)
Overview 1 RT 1: 27188-32167 bp Neighborhood of RT #1 [27188, 32167] RVT-Retrons Feature: gene Location: 27188-28831 bp Feature: gene Location: 29116-30012 bp Feature: gene Location: 30042-31463 bp Ori: OKH33462.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30591-31209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 0591-3 1209 bp Feature: gene Location: 31639-31878 bp Feature: gene Location: 31901-32167 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000044.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_44, whole genome shotgun sequence (56875 bp)
Overview 1 RT 1: 111-2910 bp Neighborhood of RT #1 [111, 2999] RVT-GII RVT-GII McrA CtkA HIRAN Feature: gene Location: 111-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576-744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576-74 4 bp Feature: domain Description: McrA Location: 978-1299 bp Feature: domain Description: McrA Location: 978-1299 bp Feature: gene Location: 1641-2244 bp Feature: domain Description: CtkA Location: 1764-2079 bp Feature: domain Description: CtkA Location: 1764 -2079 bp Feature: gene Location: 2241-2999 bp Ori: OKH31948.1 Feature: domain Description: HIRAN Location: 2628-2910 bp Feature: domain Description: HIRAN Location: 2628-2910 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000004.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_4, whole genome shotgun sequence (296225 bp)
Overview 1 RT 1: 15075-19237 bp Neighborhood of RT #1 [15075, 19284] COG3367 RVT-Retrons DUF4258 DUF2283 Feature: gene Location: 15075-15500 bp Feature: gene Location: 15518-16558 bp Ori: OKH39596.1 Feature: domain Description: COG3367 Location: 15545-16547 bp Feature: domain Description: COG3367 Location: 15 5 45 -165 47 bp Feature: gene Location: 16951-18498 bp Ori: OKH39597.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17428-18049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17428-18049 bp Feature: gene Location: 18830-19090 bp Ori: OKH39598.1 Feature: domain Description: DUF4258 Location: 18845-19055 bp Feature: domain Description: DUF425 8 Location: 18845 -1905 5 bp Feature: gene Location: 19087-19284 bp Ori: OKH39599.1 Feature: domain Description: DUF2283 Location: 19093-19237 bp Feature: domain Description: DUF2283 Location: 19093-19237 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000050.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_50, whole genome shotgun sequence (47872 bp)
Overview 1 RT 1: 69-6507 bp Neighborhood of RT #1 [69, 7841] RVT-CRISPR-like HTH_XRE DEXDc_RapA PRK04914 Feature: gene Location: 69-722 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 261-705 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26 1-705 bp Feature: gene Location: 850-4320 bp Ori: OKH31441.1 Feature: domain Description: HTH_XRE Location: 898-1039 bp Feature: domain Description: HTH_XRE Location: 898-1039 bp Feature: gene Location: 4656-7841 bp Ori: OKH31442.1 Feature: domain Description: DEXDc_RapA Location: 4959-5562 bp Feature: domain Description: DEXDc_RapA Location: 4959-556 2 bp Feature: domain Description: PRK04914 Location: 6318-6507 bp Feature: domain Description: PRK04914 Location: 6 318-6 507 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000051.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_51, whole genome shotgun sequence (45406 bp)
Overview 1 RT 1: 100-4282 bp Neighborhood of RT #1 [100, 4320] RVT-CRISPR cas1 cas1 Cas2_I_II_III Feature: gene Location: 100-1464 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103-265 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 103-265 bp Feature: domain Description: cas1 Location: 469-1435 bp Feature: domain Description: cas1 Location: 469-1435 bp Feature: gene Location: 2978-4042 bp Ori: OKH31345.1 Feature: domain Description: cas1 Location: 2990-3953 bp Feature: domain Description: cas1 Location: 2990-3953 bp Feature: gene Location: 4042-4320 bp Ori: OKH31346.1 Feature: domain Description: Cas2_I_II_III Location: 4051-4282 bp Feature: domain Description: Cas2_I_II_III Location: 4051-4282 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000071.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_71, whole genome shotgun sequence (15051 bp)
Overview 1 RT 1: 1-3158 bp Neighborhood of RT #1 [1, 3505] RVT-GII GIIM HNHc Uma2 GepA Feature: gene Location: 1-1314 bp Ori: OKH30123.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58 -619 bp Feature: domain Description: GIIM Note: maturase Location: 676-904 bp Feature: domain Description: GIIM Note: maturase Location: 676-904 bp Feature: domain Description: HNHc Note: nucleases Location: 1129-1285 bp Feature: domain Description: HNHc Note: nucleases Location: 1129-128 5 bp Feature: gene Location: 1489-2073 bp Ori: OKH30124.1 Feature: domain Description: Uma2 Location: 1519-2053 bp Feature: domain Description: Uma2 Location: 1519-2053 bp Feature: gene Location: 2732-3505 bp Ori: OKH30125.1 Feature: domain Description: GepA Location: 2735-3158 bp Feature: domain Description: GepA Location: 2735-3158 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: MRCE01000026.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_26, whole genome shotgun sequence (86033 bp)
Overview 1 RT 1: 62528-78353 bp Neighborhood of RT #1 [62528, 79399] Cas1_I-II-III DDE_Tnp_1 RVT-CRISPR cas1 HTH_XRE NACHT YprA YprA YprA Feature: gene Location: 62528-63598 bp Ori: OKH33839.1 Feature: domain Description: Cas1_I-II-III Location: 62537-63491 bp Feature: domain Description: Cas1_I-II-III Location: 62537-6349 1 bp Feature: gene Location: 64503-65831 bp Ori: OKH33853.1 Feature: domain Description: DDE_Tnp_1 Location: 65361-65505 bp Feature: domain Description: DDE_Tnp_1 Location: 65361-65505 bp Feature: gene Location: 65873-67882 bp Ori: OKH33840.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 66068-66677 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 66068-66677 bp Feature: domain Description: cas1 Location: 66887-67847 bp Feature: domain Description: cas1 Location: 66887-67847 bp Feature: gene Location: 69325-72915 bp Ori: OKH33841.1 Feature: domain Description: HTH_XRE Location: 69376-69532 bp Feature: domain Description: HTH_XRE Location: 69 376-69 532 bp Feature: domain Description: NACHT Location: 69742-70225 bp Feature: domain Description: NACHT Location: 69 742-70225 bp Feature: gene Location: 73058-79399 bp Ori: OKH33842.1 Feature: domain Description: YprA Location: 73148-74174 bp Feature: domain Description: YprA Location: 73148-74174 bp Feature: domain Description: YprA Location: 76262-76673 bp Feature: domain Description: YprA Location: 76262-76673 bp Feature: domain Description: YprA Location: 77993-78353 bp Feature: domain Description: YprA Location: 779 9 3-78353 bp Sorry, your browser does not support inline SVG.
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