myRT

myRT report for GCA_001905945.1_ASM190594v1

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Seq: LPTP01000178.1 Shigella boydii strain 600710 600710_179, whole genome shotgun sequence (7454 bp)
Overview 1 RT 1: 1-3040 bp Neighborhood of RT #1 [1, 3054] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-360 bp Feature: domain Description: PHA02517 Location: 4-358 bp Feature: domain Description: PHA0251 7 Location: 4-358 bp Feature: gene Location: 454-585 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: gene Location: 1147-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249-1 903 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 -2203 bp Feature: gene Location: 2396-2542 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-2519 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-251 9 bp Feature: gene Location: 2569-3054 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)

Seq: LPTP01000309.1 Shigella boydii strain 600710 600710_310, whole genome shotgun sequence (2665 bp)
Overview 1 RT 1: 97-2130 bp Neighborhood of RT #1 [97, 2150] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 97-792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397-790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397-790 bp Feature: gene Location: 805-1026 bp Feature: domain Description: Tra5 Location: 817-1009 bp Feature: domain Description: Tra5 Location: 817-1009 bp Feature: gene Location: 1401-2150 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1476-2130 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1476-2 130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII